Gossypium hirsutum (upland cotton): 107940856
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Entry
107940856 CDS
T04793
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107940856
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107940856
microRNA pathway
RISC loading complex
107940856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
ResIII
DND1_DSRM
dsrm
PAZ
Cas3-like_C_2
RPW8
Motif
Other DBs
NCBI-GeneID:
107940856
NCBI-ProteinID:
XP_016729804
UniProt:
A0A1U8MW48
LinkDB
All DBs
Position
D05:4265513..4279069
Genome browser
AA seq
1655 aa
AA seq
DB search
MPGGELSTDGTEPFMASKVKAFSTPSPIVEISRKDEPIMEKKEKDPRKIARKYQLELCKK
AMEENIIVYLETGCGKTHIAVLLIYELGHLIRKPQNRVCIFLAPTVALVQQQARVIEDSL
DFKVGTYCGNCRHLKNHHDWEIEIKEYEVLVMTPQILLRSLYHCFIRMDLIALLIFDECH
HAQIKSNHPYAEIMKVFYDKATASMLPRIFGMTASPVVGKDASSQVNLPKSINSLENLLD
AKVYSVGDKEELESFVASPVVRVYDYGPVNFGSSCSTIIYCSKLEEIKRQCIPFVRKNGD
IQSARNTKKLLNRMHDNIIFCLENLGIWGALQACRLLLTGNNSERNELIEDEGILSDDSV
CDRYLVHAADVFASDCTRDGSANDLSDVEILKEPFFSKKLLRLVGILSTFRLQPNMKCII
FVNRIVTARSLSYILQNLKFLLFWKCHFLVGVHSGLKSMSRKTMKNILEKFRTGELNLLI
ATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPLSEYAFLVNSGNEKELDLIKN
FKKDEDRMNVEISFRTSTEVSIGLEERIYMVDSSGASISSGYSISLLHHYCSKLPHDEYF
FPKPSFYYFEDSGGTICNIILPSNAPINQIASTPQSSVNAAKKDACLKAIEELHKLGALT
DHLLPLQNSVLEEETLLVSSDSGSSEADEDSRGELHEMLVPAVLKESWTNLENCVLLYAY
YIKFNPNPKDRSYKEFALFVKSPLPKEAERMELDLHLSRRRSVMTKLTPSGVAEFKREEI
MQAQHFQEMFFKVILDRSELLSEFITLGNVFLSSSSSTFYLLLPVILSNCENKVTVDWGI
VQRCLSSPLFKPPVAAAKIENFPSDVCLHLVNGCRSIRDIENSLVYATHKRAFYFITSIV
GEKNGYSPYRDSGTLNHVEHLNMSGIHLKYPEQPLLHAKPLFKLHNLLHNRKPEDSEANE
LEEYFIDLPPELCQLKIIGFSKEIGSSLSLLPSIMHRLENLLVAIELKHVFSASFAEGAE
VTALRVLEALTTEKCQERFSLERLETLGDSFLKFAVARHLFLLHDALDEGELTRRRINVV
NNSNLFKLATRRNLQVYIRDQPFDPYQFFPLGHPCPVICTKETKGTVHPQSSCQVDHTKS
EVRCSRNHHWLHKDTISDVVEALVGAFIVDRGFQAATAFLRWIGIRVDFQGSQLNSICAA
SKRFMPLSSLLDIGDLENLLGYQFLHKGLLLQAIVHPSFNRHGGGCYQRLEFLGDAVLDY
LITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVD
FITSSSPDRGLFEGPKYPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSV
QLNPIREVQELSQRYNWDLQFLVAKVGRKFSVDAKVNAGDVPLCVSSSNINRKEAIRTTA
HQLYVKLKALGYAPKSKSLEEVLKGSPKNEAKLIGYDETSIDVSVTDIVGFENMKLQESL
VNDFNPKTRSSKRTTSSGVSCISPGSRPPPSFEVKAARGSASGIEAKGKSPNCSIVDPSC
GIDSPSKGESHGRTARSQLYEICAINCWKPPLFECCKEEGPSHLRSFTYRVIVEIEEAPD
MILECFSSPRTTKKAAAEHAAEGALWYLKHGGYLQ
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcggcgaattgtccaccgacgggaccgagccgttcatggcctctaaagttaaa
gccttttctactccgtcgccgatcgttgaaatcagccgaaaagatgaacctataatggaa
aagaaagagaaggatccacgaaaaattgctagaaagtatcaactggagttatgcaagaaa
gccatggaagagaacataattgtttatttggagactggttgtgggaagacccacatcgca
gttctgcttatttatgagcttggccatttgatacggaaacctcagaatagggtatgcatt
tttcttgctcccacagtggctcttgttcagcagcaagcccgggttatagaagattctctt
gatttcaaggttgggacttattgtggtaactgcagacacttgaagaaccatcatgactgg
gaaatagagatcaaagaatatgaggttcttgttatgactccccaaatactacttcgtagc
ttgtatcactgcttcatcaggatggacttaatcgctcttctgatatttgatgagtgtcat
catgctcaaattaaaagcaaccatccttatgcagaaatcatgaaagttttttatgataaa
gctactgcatcaatgcttcctcgtatatttggaatgacagcatctcccgttgttggtaaa
gatgcttccagtcaagtaaatttacctaaaagcatcaacagcctcgaaaacttgcttgat
gctaaggtatattcagttggagataaggaggaattggaaagctttgtagcatctcctgtg
gttagagtatatgattatggtcctgtcaattttggttcttcttgttccaccattatctat
tgtagtaaacttgaggagattaagcgccagtgcataccttttgtcaggaagaatggtgat
attcaatctgccaggaacacaaaaaagctgctcaacagaatgcatgataatataatattt
tgcttagaaaatctgggcatttggggagcattgcaagcttgccgacttcttttaactggt
aataactctgagaggaatgaattgatagaagatgaagggattttaagtgacgactctgta
tgtgatcgatatcttgttcatgctgctgatgtttttgcttcagattgtacgagagatgga
tctgcaaacgatttatctgatgtagagattttgaaggagccatttttctcgaaaaagctg
ctacgtcttgttggaattctttccaccttcaggttacagccaaatatgaaatgcataatt
tttgtgaataggattgttactgcaagatccttgtcatacatactgcaaaaccttaagttc
ctattattttggaagtgccattttcttgtgggagtccactctggacttaaaagtatgtca
agaaagacaatgaaaaacattcttgagaagttcagaacaggagagttgaatcttttgatt
gcaactaaagtcggtgaagaaggacttgacattcagacatgctgccttgtgatacgtttt
gaccttccagaaactgttgcgagctttatccaatcaagaggacgtgcaagaatgcctctc
tctgagtatgcatttctggtgaacagtgggaacgagaaggaactagatttgattaaaaat
tttaagaaagatgaagatcgtatgaatgtggaaatttctttcagaacatctactgaggtt
tctatcggtcttgaggagagaatctatatggttgattcatctggtgcttccatcagttca
ggatatagtatctctctacttcatcattactgctcaaaactgccccatgatgagtacttt
ttccccaagccaagcttttattattttgaagattcaggaggaacaatctgcaatataata
ttaccttcgaatgctccaataaatcaaattgccagtacacctcaatcttcagttaatgct
gccaaaaaagatgcttgtctaaaagcaattgaagaattgcataaattgggagccttgact
gaccatctcttgccactgcagaacagtgttcttgaggaggaaacattgctggtgtcttct
gattctgggagctctgaagcagatgaggattcacgaggtgaactacatgagatgcttgtt
cctgctgtgcttaaagaatcatggactaacttagagaactgtgtcctcctttatgcttac
tatataaaatttaatccgaatcctaaggacaggagctataaagagtttgctctctttgtc
aagtcgcctctccctaaggaggctgagagaatggagctggatcttcacctatctcgccgt
aggtcggtgatgacaaagcttaccccatctggagttgcagaatttaagagagaagagatc
atgcaggcacagcattttcaagaaatgttcttcaaggtcatccttgatagatcagaactc
ctttctgaatttattactttaggaaatgtctttctttcatcaagctcctcaacattctat
ttattgcttcctgttattctctccaattgtgagaataaagtgacagtggattgggggatt
gtgcaaagatgtttgtcgtctccactttttaagcctcctgttgcagctgcaaagattgaa
aatttcccttcagatgtttgcttgcaccttgtaaatggttgtaggagtataagagacatt
gagaatagtttggtgtatgccacacacaagagggccttttactttattactagcattgtt
ggtgaaaaaaatggttacagcccatatagagattcaggcactttaaatcacgtggagcac
ttaaacatgtctggcattcatcttaagtaccctgaacaacctcttctgcatgcaaaacca
ctttttaagttgcacaatttgctccacaaccgaaagccggaggattcagaagcaaatgaa
ctggaagaatacttcattgatttgcctcctgagctttgtcagctgaaaataataggcttc
tccaaagagatagggagttcgctttctttgttaccatcaattatgcatcgcctggagaac
ttgcttgtggctattgaactgaagcatgttttttctgcttcatttgccgagggagctgaa
gttacagcccttagggtcctagaagcacttactacagagaagtgtcaagagcgtttttct
cttgaaaggcttgagacacttggtgattccttcctcaagtttgctgtggcccgccatctt
tttcttttacatgatgcacttgatgaaggggaattgactaggagaaggattaatgttgta
aataattctaatttattcaagctggcaacaaggcgaaatttacaggtttacatacgtgat
caaccttttgatccttatcagttctttcccttgggccatccctgcccagtaatttgtaca
aaagaaactaaaggaactgttcacccacaatctagttgtcaagtagatcatacaaagagt
gaagtcagatgtagtagaaatcaccattggctacataaggacacaatttctgatgtggtt
gaggctcttgtaggagcatttatagttgataggggcttccaagcggcaacagcatttctt
agatggataggcatacgagtggacttccaaggttctcaacttaatagtatttgcgctgca
agcaagagatttatgccactttcctccctattggatattggagatcttgaaaatttgttg
ggttaccagtttcttcataagggtctcctccttcaggcgattgtgcatccttcttttaat
aggcatgggggaggctgctaccagagattggagtttcttggagatgctgtcttagattat
ttaattacatcatatctgttttcactgtatccaaagttgaaacctggtcagttgactgat
ttgagatcagtgtcagtgaacaacaagtcctttgccaatgttgccgtggacagacgctta
cacaaatttcttatgtgtgactcttgtcacctcaacgaggccatagaaaaatatgttgac
ttcatcacatcatcatcaccagacaggggattgtttgaagggccaaaatatccgaaggct
cttggtgacttggtagagtcttgtttcggtgctattctccttgatacagggttcaacttg
aaccgtgtttggaagataatgctatccattctggatccaatcaagagcctttcaagtgtg
cagctcaatcctatcagggaagtacaggagctttcccagcgttataactgggatttgcag
tttctagttgcaaaagttggtagaaaattttcagtggatgcaaaggtaaatgcaggagat
gtacctctatgtgtttcttccagcaacattaatagaaaagaagctatcagaactactgca
catcaactatatgtaaagttaaaggctctaggatatgcacccaaatcaaagtccttggaa
gaagttttgaagggaagccccaagaatgaagccaagctgattggatacgatgaaacatcc
attgatgtcagtgttactgacatagttggatttgaaaacatgaaattgcaagaatctctt
gtgaatgatttcaaccccaaaacccgttctagtaaaaggacaacttctagcggtgtatct
tgcatctcacctggtagcagacctccaccttcttttgaagtaaaagcagcaaggggttca
gcctctggtattgaagccaaaggcaaatcccccaattgctccattgtggatcctagttgt
gggattgactcgccatccaaaggtgaatcacatggtcgtactgctagatcacagttatac
gaaatctgtgctatcaattgctggaaaccccctttgtttgaatgttgcaaagaggaagga
ccaagtcatttgagatcattcacttacagggtaatagttgaaatcgaagaagctccagat
atgatattggagtgcttcagcagtcctcggaccacaaagaaggcagcagccgagcatgca
gcggaaggtgcactctggtatttaaaacatggaggatacttacaatag
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integrated database retrieval system
