KEGG   Gossypium hirsutum (upland cotton): 107941274
Entry
107941274         CDS       T04793                                 
Name
(RefSeq) DNA repair protein RAD5A isoform X1
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107941274
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    107941274
SSDB
Motif
Pfam: SNF2-rel_dom UBA_RAD5A Helicase_C HIRAN zf-C3HC4_3 zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-RING_2 DEAD zf-C3HC4_4 zf-RING_5 Prok-RING_4 RING_XB3-XBAT31 ResIII zf-RING_4 zf-ANAPC11
Other DBs
NCBI-GeneID: 107941274
NCBI-ProteinID: XP_016730321
UniProt: A0A1U8MU07
LinkDB
Position
A13:complement(110622426..110630739)
AA seq 1037 aa
MGGNKVSEDLISTVRLIVGSDYSEMDIIRALHLAKHDATAAINIIFDSPRSFKPREKQIE
PESEPVVRISSSDISTVSVKPKKTGKENKDFSFSSNGNVACGGNDLEDEGNVRLENDWGF
VGSSEVPGLSTSKGRKIKVGEEVSFTFPLKGTGSSPAGSMGKGFGKGRAAAACSEIVRFS
TKNFGEIGRIPNEWARCLLPLVRDKKIRVEGRCKSAPDVLGVMDTVLLLLSVYINSSMFH
KYQQTSLKAASNCNDESIVHPLPSLFRLLGLTPFKKAELAPGDLYTKKRPLETKDGSGIH
TPLLTANKFKNPSQNGNEVENDESISDADLENIVGVGDNSELEEMDPPSTLQCELRPYQK
QALQWMFQVEKGNCMDEAATTLHPCWEAYRLADRRDPVIYLNAFTGDATIEFPSTHQMAR
GGILADAMGLGKTIMTISLLATHSERGGLSDSQSSDQPSDQGGEAIDVFSQSPNSVKTAT
KFPGFDKLSKQRNKLANGGNLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRPKDAK
LLAQNDVVITTYGVLASEFSAENSEDNGGLYSVRWFRIVLDEAHTIKSSKSQISMAAAAL
VADRRWCLTGTPIQNKLEDLYSLLRFLKVEPWGNWPWWNKLIQKPFEEGDQRGLKLVQSI
LKPIMLRRTKCSTDRYGKPILVLPPADVQVIYCELSEAEKDFYEALFKRSKVKFDQFVEQ
GRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYTDLNKLAKRFLRGGQSTLDGEAKD
LPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNPNSGLCPV
CRKTVTKQELITAPTESRFQVDVEKNWVESTKVVVLLQELENLRSSGSKCILFSQWTAFL
DLLQIPLSRNNIPFLRLDGTLNQQQREKVIKQFSEDSKIMVLLMSLKAGGVGINLTAASN
AFVLDPWWNPAVEEQAVMRIHRIGQTKRVAIKRFIVKGTVEERMEAVQARKQKMISGALT
DEEVRTARLEELKMLFT
NT seq 3114 nt   +upstreamnt  +downstreamnt
atgggtggaaacaaggtatcggaggatctcatttccaccgtccggttgatcgttggatcg
gattattccgagatggacataattagagcgcttcacttggccaaacacgatgcgaccgct
gccatcaacataatttttgattcgcctcgaagtttcaagcccagggagaaacaaattgaa
cccgaatccgaacccgtggtccgaatttcgagctccgatatatcaacggttagcgtaaag
ccaaagaaaacagggaaagagaacaaggattttagttttagtagtaatggaaatgttgca
tgtggtgggaatgatttggaagatgaaggaaatgttaggcttgaaaacgattgggggttt
gttggttccagcgaggtacctgggctttcgacgagtaaaggaaggaaaattaaggttggg
gaggaagttagcttcacgtttccgttgaagggtactggctctagtccggctgggtcaatg
gggaaaggctttgggaaaggaagagcagctgcagcttgttcagagattgttagattctct
acaaagaactttggggagattggtagaatacccaatgaatgggcacgctgtctgttgccg
cttgtgagggataagaagattagagttgagggaaggtgtaaatcagctccggatgtgtta
ggtgtaatggatactgttctcttattgttaagtgtgtatattaatagttccatgttccat
aagtatcagcaaacttcactcaaggcagcaagcaattgcaatgatgaatctattgttcat
cctcttccaagtttgttccggttgcttggcctaacaccttttaagaaggcagaactagct
cctggtgatttgtacacaaagaaacgacctttggagacaaaggatggttctggtattcat
accccattattaactgcaaacaaatttaagaatccatctcaaaacggaaatgaggttgaa
aatgatgagtcaatctctgatgctgatcttgaaaacattgttggtgtgggagacaactct
gaattagaggaaatggaccctcctagcaccctccagtgtgaacttcggccttatcaaaag
caggctctccagtggatgtttcaggtggagaagggaaattgcatggatgaggcagcaaca
acactgcacccttgctgggaagcatatcgcttagcagataggagagatcctgttatctac
ttgaatgcatttactggtgatgctacaatagaatttccaagcactcatcaaatggctaga
ggaggaatcttggcagatgctatggggcttgggaagaccatcatgactatatccctctta
gcaacccattcagaaagaggtgggctatcagatagtcaatcctcagatcagccttctgat
caaggtggtgaagccattgatgtattcagccaatcaccgaattctgtgaaaactgcaacg
aagtttcccggctttgataagttgtcaaagcaaaggaacaaacttgcaaatggtggcaat
ctgattatatgtcccatgactcttcttggccaatggaaggcagagattgaaactcatgtg
cagcctggatctttgtctttatatgttcattatggtcaaagtaggccaaaggatgcaaaa
cttcttgcccagaatgatgttgtaatcactacatatggggttctagcttcagagttttca
gcagagaactctgaagataatggaggactgtactcggtgcgttggttcaggattgttctt
gatgaagcacataccataaaatcctcaaaaagtcaaatttccatggctgcagctgcttta
gttgctgatcgtcgctggtgtctcactgggactccgatccagaacaagctggaggatcta
tacagtctcctccgctttttgaaggtggaaccttggggaaactggccctggtggaacaag
ctcatccaaaaaccatttgaggaaggtgatcagagagggctaaagttggttcagtcaatc
ttaaagccaatcatgttaaggagaacaaaatgtagcacagaccgatatggcaagccgatt
ctagtgctacctccagccgatgttcaggtgatatactgtgagctcagtgaagctgaaaag
gacttctatgaagccctatttaaaagatcgaaggtgaagtttgatcagtttgttgaacaa
ggtcgtgttcttcataattatgcttctattttggagttacttctacgtctacgtcaatgt
tgtgatcatccgtttcttgtgatgagccgaggagatacacaagaatacacagatcttaat
aagctggctaaacggttccttagaggcgggcagagtaccctagatggtgaagccaaggat
ctaccttcaagggcatatgtccaggaagtggttgaagagctgcggaagggagaacaagga
gagtgtccgatatgtcttgaagcatttgaagacgctgtactgactccatgtgctcaccgc
ttatgccgcgagtgtctcttggcaagttggcggaatccaaattctggtttatgccctgtt
tgtaggaaaactgttacgaagcaagaacttattacagccccaactgagagtcggtttcag
gttgatgttgagaaaaattgggtggagtccaccaaggtggttgttctattacaagaactt
gaaaatcttcgctcatcaggctctaagtgcattctcttcagccagtggactgcatttttg
gacctcttgcagattcctctttctcggaataacattccgtttcttagactcgatgggact
ttgaatcaacagcaacgcgaaaaagtaataaaacagttttcagaagatagcaaaattatg
gtgttgctaatgtcactcaaagctggtggggtcggaataaatctaactgcagcttccaat
gcctttgttttggatccgtggtggaatccggctgtagaagaacaagctgtgatgcgcatt
catcgtattggccaaactaaaagggttgcaatcaaacggttcattgtcaagggaacagta
gaggaaaggatggaagcagtacaagcacgcaagcagaagatgatatctggtgccttaacc
gatgaagaagttcgaacagcacgtcttgaagaactcaaaatgcttttcacttaa

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