Gossypium hirsutum (upland cotton): 107941564
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Entry
107941564 CDS
T04793
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107941564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107941564
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107941564
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
107941564
NCBI-ProteinID:
XP_016730612
UniProt:
A0A1U8MUV5
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Position
A06:122020282..122025224
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AA seq
762 aa
AA seq
DB search
MEKDKHATKRSRAGDGRHHRDSDHHHDSCDSHRRSDHRSSTSRRDERERSFEREGSRDKK
HREGSYEEVEAKRKRKEREESEERGEKRSKLGEENRREKRERRRFGDKAKADDEIEFSNG
ANGGDPVQNGAAQASLPKTGHPLPTKVSSISTAENKAYSVTGSHEVTGSSTDGSSSTGKS
GANLSLDALAKAKKALQMQKELAEKLKKIPSLNKGPSSSSVVTTGTVQRPVSTVPTSVAT
GPSSSSVPPASAAVASVKPPTTGMPAVPGLASIPNLEAVKRAQELAAKMGFRQDPQFAPL
INLFPGQVQVDVPVPQKPTKAPVLRVDALGREIDEHGNIINVTKPSNLSTLKVNINKQKK
DAFQILKPELEVDPESNPHFDTRMGIDKNKLLRPKRMTFQFVEEGKWSKDAEVIKLKSQF
GEAKAKELKAKQAQLAKAKADINPNLIEVSERIITKEKPKDPIPEIEWWDLPILVSGSYD
DIPDGVLCEDKLKKEKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLARE
KDKQEMIRQGLIEPPKPKVKLSNLMKVLGSEATQDPTKLEMEIRSAAAEREQAHVDRNIA
RKLTPAERREKKERKLFDDPNMVETIVSVYRINDLSDPKTRFKVDVNAQENRLTGCAVIS
EGITVVVVEGGSKSIKRYGKLMLRRINWAEAVKDDKDGDEDEDEEKPPNKCVLVWQGSVA
KSSFNRFSVHECITEAAAKKVFADARVAHYWDLAVNFSENDF
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagataaacacgcaaccaaacgctcccgagccggcgacggccggcaccaccgt
gactccgatcaccaccacgacagctgcgattcccaccggcgatccgatcatagatcttcc
acatcgcgccgtgacgagcgcgagagatcttttgagagggaaggttcgagagataagaag
catcgtgagggttcctatgaagaagttgaagcgaagaggaagaggaaagagagggaagag
agtgaggagaggggagagaagaggagtaaacttggagaagaaaacagaagagaaaagaga
gagaggaggagatttggggataaggctaaagcagatgatgaaattgagttctccaatggc
gccaatggtggtgatccagttcaaaatggtgctgctcaggcatcattaccgaagactggt
cacccccttcctaccaaggtatcttcgatttctactgctgaaaataaagcatatagtgtt
accggatctcatgaggttactggatctagtacagatggctcttcttctactgggaaaagt
ggtgcaaacctctctcttgatgccttagccaaagcgaaaaaggctttacaaatgcagaaa
gaattagctgagaaactgaagaagataccctcattgaacaaaggccctagctcgagttca
gtagtgactactggaacagttcaacgaccagtctcaactgtgcctacatctgttgccact
ggaccatcaagctcatcagttccccctgcctctgcagcagtagcttctgtgaagccacct
actactggcatgcctgctgttccgggccttgcgtcaatacccaatttagaagctgttaaa
cgtgctcaggagctggctgctaagatgggattccgccaggaccctcagtttgctcctcta
ataaacttgtttcccggacaggtgcaagtagatgttccagttccacagaaacctacgaag
gcacctgttctccgtgttgatgcactcggtagagaaattgatgagcacggtaatatcata
aatgtgactaaaccaagtaatcttagcaccctcaaggtcaacattaacaagcaaaagaaa
gatgcatttcagatccttaaacctgaactggaggtggatccagaatcaaatccacatttt
gatacacggatgggaatcgataagaacaagcttcttagaccaaaaaggatgacttttcag
tttgtagaggaagggaaatggtcaaaagatgcggaggtcatcaaattgaagagtcaattt
ggagaagcaaaagcgaaagagctaaaagcaaagcaagcacaattggcaaaggcaaaggct
gatataaatccaaatttaattgaggtgtcggaaagaattataacaaaggagaaaccaaaa
gacccaattcctgaaatagagtggtgggatttacctattctggtttcgggttcctacgat
gatatccctgatggtgtgctgtgtgaagataaactgaagaaggagaaaatcacaatatat
gttgaacatcctcgtccgattgagcctcctgctgagccagctcccccaccacctcagccc
ctgaagctaaccaagaaggagcagaagaaacttcggactcagcgacgtctggcccgggag
aaggataaacaggagatgattagacaaggcctgatagaacctccgaagccaaaagttaag
ttgagcaatttaatgaaagttttaggctctgaagctacccaagatcctactaagcttgaa
atggaaatccgaagtgctgctgctgagcgggaacaagctcatgtcgacaggaacattgct
cgcaagcttactcctgccgagcgccgtgaaaagaaagagagaaagctttttgatgaccca
aatatggtggagactattgtttcggtttacaggatcaatgacctctctgatcccaagacc
cgcttcaaagttgatgttaatgcccaagaaaatcggttgactggttgtgctgtgatttcc
gagggcattactgttgtagtagtggaaggtggaagcaaatccattaagaggtatgggaag
cttatgcttcggagaatcaactgggctgaagctgtaaaagatgacaaggacggagatgaa
gatgaagacgaagagaaaccgcctaacaagtgtgtgctggtttggcaaggtagcgttgca
aaatcaagtttcaacaggttctctgttcacgagtgcatcaccgaagcagccgcgaaaaag
gtatttgctgatgcaagagttgcccattactgggaccttgcggttaatttctctgagaat
gatttttga
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