KEGG   Gossypium hirsutum (upland cotton): 107941566
Entry
107941566         CDS       T04793                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ghi03009]
    107941566
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    107941566
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_EML Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR36-Utp21_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_VPS8 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_IP5PC_F Beta-prop_RIG_2nd Beta-prop_WDR41 WD40_Gbeta WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_SCAP Beta-prop_ACSF4 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_SPT8 WDR54 Beta-prop_LRRK2 Beta-prop_BBS7 Beta-prop_NWD2_C Ge1_WD40 PEP5_VPS11_N Beta-prop_DCAF12 Nucleoporin_N Beta-prop_NUP159_NUP214 Syntaxin_2
Other DBs
NCBI-GeneID: 107941566
NCBI-ProteinID: XP_016730620
UniProt: A0A1U8MUX1
LinkDB
Position
A06:complement(1959860..1962763)
AA seq 444 aa
MNVVIASSSIDGGIGCWDLQTGAEQLRYKTCASPPHGLTSVGCRFLACSQLRDPSATSGH
LLYWSWSKPQAQVKSFPAEPIKPLIANSDGAYIVGGGSSGDIYIWEVATGRLLKKWHAHY
RAITCLVFSEDDSLLISGSEDGCVRVWSLFMIFDDVRRQQVSHLYEYSFTEHTLRVTDIV
IGYGGGNAIIVSASEDRTCKVWSLSKGRLLRNVVFPSIIDAIAIDPGEHVFYAGSRDGKI
YIAALNAESSPRDNYGLHIIGSLTDQSKPVTCLAYSAEGDLLLSGSEDGMIRVWDVKTQN
ITRMFRHSKGPVNNIVIVRLPYPLGWAESKSQPSSRKHELSLPPPLEKYANSTDEDMDNK
AIVMLPDSIDLPSYLSSHLINDHIKQLQQQGSSAVAEMEAKRLKADCQRSMEMFQQLRKV
YDNLQEFCVNELLDEQTMEGSKGN
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgaatgtagtaatagcatcatcttcaatcgacggcggcatcggttgctgggacctacaa
acaggggcggagcaactccgttacaaaacttgcgcctcccctccacacggccttacctcc
gtcggttgccgtttcctcgcctgctctcaacttcgtgacccctccgccacctccggtcac
ctcctttattggtcttggtccaagcctcaagcccaagttaaaagctttcccgctgaaccc
attaaaccgcttattgctaatagcgatggtgcttacatagttggtggaggttcatcaggt
gatatttacatttgggaggttgctacgggtaggttattgaagaaatggcatgctcattat
agagcaattacatgtttagttttctctgaagatgattcacttctcatttccgggtccgaa
gatggatgcgttcgagtttggtcgcttttcatgatattcgatgatgttagacggcagcag
gttagtcatctttatgagtatagttttacggaacatactctgcgtgtaacagatattgtt
attggttatggcggagggaatgcaatcatcgtgtcggcttccgaggaccgaacttgtaag
gtatggagcttatccaagggaagattattacgaaacgttgtgtttccttccatcattgat
gcaattgcaatagaccctggtgaacatgtcttctatgccggcagccgagatggtaaaatt
tatattgctgctcttaatgccgaaagttcccctagggacaactatggattgcacatcatc
ggttcactaactgatcaaagtaagccagttacatgcttggcatatagtgctgaaggagat
ttgctactatctggatcagaggatggcatgattcgagtttgggatgtgaaaacacaaaac
attactcgcatgttccgacattccaaaggccctgtgaacaatattgtcattgttagactt
ccatacccccttggttgggcagaatcaaaatcacaaccttcctcaagaaagcacgaactt
tcactcccacctccgctagaaaaatacgcaaattcaaccgatgaagacatggacaacaag
gctattgttatgcttccagatagtatcgacctcccttcatacctcagttctcatctaatc
aatgatcacattaaacaacttcagcaacaagggtcttcggctgtggccgaaatggaagcg
aagagactgaaggctgattgtcaaagatcaatggagatgtttcaacaactgagaaaagtt
tatgataacttacaggaattttgtgtcaatgagctcttagatgaacaaacaatggaagga
tccaaagggaattaa

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