Gossypium hirsutum (upland cotton): 107941920
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Entry
107941920 CDS
T04793
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107941920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107941920
03036 Chromosome and associated proteins [BR:
ghi03036
]
107941920
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107941920
Coactivators
SAGA/TFTC/STAGA complex
107941920
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
107941920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
107941920
NCBI-ProteinID:
XP_016731034
UniProt:
A0A1U8MZN1
LinkDB
All DBs
Position
A05:complement(29596998..29602426)
Genome browser
AA seq
941 aa
AA seq
DB search
MDPSIVKLLEEEEDESMHSGADVEAFQAALNRDIEGDASNSQQSGSNIAVLSQGSNPASS
QSVAQWPASGQDGNSNFQNQQVLQSAQQQQQTLSESEQKQHGAVVTGSQQQVQQPNDVPK
EHSRLPPQQKQPQEDHPQGVTEQIPAPVPQTTGIQSQTTEKSPISREPERTNNQDSESQY
AKLQKLSNHQASGAEQPNSPMNRGKQVPFAVLLPALLPQLDKDRAMQLHTLYGKLKKNEI
AKDGFVRHMRDIVGDQMLRLAVNKLQVQMSSNQFPLQSPAGLRQNTPRMPSVGSATQFAG
PHSLAQLHQKGPNSPANSSHAPSTPVPMQTNSSYLSGENKAQKSQDMDCQSDSRFGMLGS
QISSTGSTTVNQERGRPSIPAQGINKQQQQHLNFPQTSFAMYGSNNYHTYSGPNVNTSGS
SLKPQPHDSQMRPTAHQSMGSNPAVGGSTQAMNMMSGPKLERQNSSNDPNRLQGTSLSHF
SSGSVPWQASPSKELNPGPFSSATYVKQESADQGADQHRSHLPATQGVSTTLAEQGKAVT
TTAKDEPGEKQSSRVAFTTTPSITAQLDSNVLLGSRNPSVPAPTGMNARTPQKKPSIGQK
KPLEALGSSPPPSSKKQKVSGAFSDQSIEQLNDVTAVSGVNLREEEEQLLSGPKDESRVS
EASRRVVQEEEERLFLKKTPLQKKLAEIMAKSGLKNISNDVERCLSLSVEERMRGLICNL
IRLSKQRVDIEKPRHRTVITSDVRQQIMMMNQNARGEWEKKQAEAEKLQKLNEPEAETAF
DGDKEKDDSRVKAVKVNKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGG
TDAASGSQASKDANRRPLSASGKSTKDNQESEKRGPLNPHGSGTSKKFGRNQGTTLTAHA
RVARTISIKDVIAVLEREPQMSKSTLIYGLYKKTCSESKAE
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggacccttccatagtgaagctccttgaagaagaagaggacgagtctatgcattctgga
gctgacgttgaggctttccaggcggcgttgaatcgagacattgaaggcgatgcgtcgaat
tctcagcagtctggttcaaatatcgcagttctgtctcaaggaagcaatccagcttccagt
caatcggttgcgcaatggccggcctcggggcaagacggaaactccaactttcaaaatcaa
caagtccttcaaagtgcacagcaacagcagcagactttgtctgaatcagagcaaaagcag
cacggagctgttgtcactggaagtcagcaacaagtgcaacagccaaatgatgttccaaaa
gaacatagtcgtctaccaccacaacaaaaacaaccccaagaggaccatccacaaggagtg
accgaacaaattcctgccccagttcctcaaactactgggattcagagccagactactgaa
aaaagtcccatctcgcgtgaacctgagagaaccaataatcaagacagtgaatcacaatat
gcgaaattacagaagctgagtaatcatcaggccagcggagcagagcagccaaatagtcct
atgaatcgaggaaaacaagttccatttgccgtgttgttgcctgctttactgcctcaactt
gataaagatagagccatgcagcttcatactctgtatggtaaactaaagaaaaatgaaatt
gcaaaagacggatttgttaggcacatgagagatattgtaggagatcagatgctgaggttg
gcggttaacaagttacaagttcagatgagttccaatcaattcccattacagtccccagca
ggattacggcagaatactcctcggatgccctctgttggcagtgccacacagttcgctggc
ccacattcattagctcagctgcaccaaaagggtcctaattctcctgccaattcatctcat
gccccctctacaccagtccccatgcagactaattcaagttatttatctggtgaaaacaag
gctcaaaaatctcaagacatggattgccaatcagattctcgctttggaatgctaggtagt
caaatttcttccactggttcaaccactgtgaatcaagaaagaggtcgtccttcaattccg
gcacaaggaattaacaagcaacagcaacaacatttgaatttcccacaaacttcattcgcc
atgtatgggagtaataattatcatacatattctgggccaaatgttaatacttcgggttcc
tctttaaagcctcaacctcatgattcacaaatgaggccaactgcacatcaaagcatggga
tcaaatcctgctgtaggaggatcaacccaggcaatgaacatgatgagtgggcctaagctt
gagaggcaaaactctagtaatgacccaaatagattgcagggcacatcactttctcacttt
tctagtggttcagttccttggcaagcctctccgagtaaggagctgaatcctggccctttt
tcatcagcgacatatgtgaaacaggaatctgctgatcaaggtgctgaccagcacagatct
catttgcctgcaacccagggagtctcgactacactagctgaacaagggaaggcagttaca
actactgcaaaggatgagcctggagagaagcagtcttctagagttgccttcacaacaaca
ccctccatcacagcacaattggattctaatgtcctgttgggctctaggaatccatctgtg
cctgctccaactgggatgaatgcaagaactcctcaaaaaaagccttctattggccagaag
aaaccactggaagctcttggttcatcaccaccaccatcaagtaagaagcaaaaagtgtct
ggagcattttcagatcagagcattgaacaactaaatgatgtcactgctgtcagtggagtc
aatctcagggaagaagaggagcaactattgtctggtcccaaggatgagagtcgagtttca
gaagcatccagaagggttgtgcaagaggaagaagaaagactatttttgaagaaaacccct
ttgcagaagaaattggctgaaattatggccaaaagtggtttgaagaatataagcaatgat
gttgaacgatgcttgtccctgagcgtggaggaaagaatgcgtgggctcatatgcaattta
atcagactgtcgaaacagcgtgttgatattgagaagcctaggcaccggacagttatcacc
tcggatgttcggcagcaaattatgatgatgaaccagaatgctaggggagaatgggagaaa
aagcaggctgaggcagagaagctccagaaacttaatgaacctgaggctgagactgccttt
gatggtgacaaggagaaagatgacagtcgagtaaaagcagtaaaggtaaataaggaggag
gatgacaagatgaggaccactgctgcaaatgttgctgctcgtgctgctgttggaggggat
gacatgctgtcaaaatggcagcttatggctgagcaagctcgccagaaacgtgagggagga
acggatgcggcatctggttcacaggcaagtaaagatgcaaaccgcaggcctttatctgca
tctgggaaaagtacaaaggacaatcaagaatctgaaaagaggggccctctcaatcctcat
ggatctgggacaagcaagaaatttggccggaaccaaggtacgacactcacggcccatgct
agagtggctcgtactatttccattaaggatgtgattgcagttctggaaagagagccccaa
atgtcaaagtctacacttatttatggcttgtacaaaaaaacctgctccgaatctaaagcg
gagtga
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