Gossypium hirsutum (upland cotton): 107941967
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Entry
107941967 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107941967
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107941967
09122 Translation
03013 Nucleocytoplasmic transport
107941967
03015 mRNA surveillance pathway
107941967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107941967
03041 Spliceosome [BR:
ghi03041
]
107941967
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107941967
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107941967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
107941967
NCBI-ProteinID:
XP_040963823
UniProt:
A0ABM3B9U3
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Position
D12:complement(35217443..35219394)
Genome browser
AA seq
538 aa
AA seq
DB search
MSSKHEILDNRPIDKWKVIELKEELKRRKLTTRGLKKDLVKRLDEAIRAERENNTANEAD
NGFNYDEGVEKAMASIVEKVEDDGGSGLKLKDDVIDCATASGHGVVKTEITLTHTVVTEV
PEVGQNLQIPKLEENVNSNIQVENDGPKLEVERDDPKAQLGNEDGMRASSALNNQVSEIN
TISTDSMSVNEKIELKDTVIDDNVKQSLDVVPMDDEQPLENKASVDERDDKNDTTTDISS
KNDSGEMGYSGKLNLDRSSGDESMEEDMLETKQIDPKCTSDEIGENSVENEEGMHVVVGD
GSSTDRKDVFDVPAEKRKLYDDEAIGNTEATKRHKWNSDNLQVVVQQATNHTVTNNTSED
TPGERLVPPSQKPPTTSLRVDNFRRPFTLKAVRQLLGKTGIIASFWMDHIKTHCYVTYLS
VEEAIETRNAIYNLQWPPNGGRLLVAEFVDPHEVENRVESPPPTTTVTDNCGFTAHQEQV
SEQQPLSPPPPEEPDSPMLTLDDLFRKTKATPKIYYLPLSEEQVAAKQATHYRHTKHW
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaagcacgaaatacttgataatcgaccaattgataaatggaaggttatagag
ttgaaagaagaactcaagagacggaagttgacaactcgaggcttaaaaaaggacttggta
aaacggttagatgaagctattagagcagaaagggaaaacaatactgcaaatgaggcagat
aatggttttaattatgatgaaggggtcgagaaagcaatggcaagtattgtagagaaagtt
gaagatgatggtggtagtgggttgaagttgaaggatgatgttattgattgtgcgactgct
tcgggtcatggagtagttaagactgaaataacacttacccacactgtggtaacggaggta
ccagaggttggacaaaatttgcagatcccgaaactagaagaaaatgtgaattctaacatc
caagtggagaatgatggtccgaagcttgaggtggagagggatgatcccaaggctcagcta
gggaatgaggatggcatgcgtgcctcttctgctttgaacaatcaggtatctgagatcaac
actatttctactgattctatgtcagttaatgaaaagattgaactaaaggatactgtaatt
gatgataatgtgaaacaaagcctagatgttgtaccgatggatgatgaacaaccacttgag
aacaaggcatctgttgatgagagagatgacaagaatgatacaactacagacataagcagt
aaaaatgacagtggggagatggggtactctgggaaattaaatttagatagaagttctggc
gatgaatcaatggaggaagatatgcttgaaactaagcaaattgatccaaaatgtacttct
gatgaaataggagaaaatagtgtggaaaatgaggagggaatgcatgttgttgtaggagat
ggttcatctacagacagaaaggacgtctttgatgttcctgctgagaaaagaaagctttat
gatgatgaagctattgggaacactgaggctacgaaaaggcataaatggaactctgataat
ttacaagttgtagtgcagcaagccactaatcatacagtgaccaacaacactagtgaagat
acacccggggaacgacttgttccaccttcacaaaaacctccgaccacttcacttagagtt
gataattttcgtcggccttttaccttgaaagcggtgcgacaacttttaggcaaaactggg
attattgcaagcttctggatggaccacattaagacccattgttatgttacatatttatct
gtggaagaagcaatagagacacgaaatgccatttataacctgcaatggccacctaatggg
ggacgtctgttggtggctgaatttgttgatcctcatgaagttgaaaatcgtgtagaaagt
ccaccaccaactacaactgtcaccgacaactgtggttttactgctcatcaagaacaggtt
tctgaacagcagcctctttcaccacctcctccagaggaaccggattctcctatgctaacc
ctagatgacctatttcgaaaaaccaaagcaactcctaagatctattatttgcctctgtca
gaagaacaagttgctgcaaagcaagctacacattacagacacaccaaacactggtga
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