Gossypium hirsutum (upland cotton): 107941978
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Entry
107941978 CDS
T04793
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107941978
09124 Replication and repair
03420 Nucleotide excision repair
107941978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107941978
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107941978
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107941978
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107941978
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
107941978
NCBI-ProteinID:
XP_016731103
UniProt:
A0A1U8MZU3
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All DBs
Position
D07:complement(17127395..17134923)
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AA seq
597 aa
AA seq
DB search
MASTHVTKRAKYKTTIKDPGTPGTLRMTFEKILFVPHNPKSAGKLDVEFRYIKGQKHTKE
GSNKPPWLNLTNNQNGSFIFEFENYSDLQECRDFVGKVLAKGGEVSEKPTVAYPDEQLSA
AEMELRIKLLQEDSELQKLHKQFVLSGVLTETEFWATRKKLLDREVSKKTKQRLGFKSAM
ISDIKPSTDGRTNKVTFNLTPEVILQIFAEKPAVHRAFLSYVPNKMSERTFWTKYFRAEY
LHSTKNSIAAAAEAAEDEELAVFLKQDDILASEAQKKIRRVDPTLDMEADEGDDYTHLPD
HGIFREGNKEMTESQNELYKRSLSQDINRHAAVVLEGRAVDVELEDTKAVAEALAQSKQK
SSNKGESDGDISRERLDRLSRMTEIEDLQGPNTLPLAPLCIKDPRDYFDSQQANALRTSG
DALGGIEQIKCGLSTQEVYGSLRESISSIKAMGLKEPIVKPEVAHQVFDALTNSISNTKY
HIGKNPQESVLDRLPRKTKEELLHHWTSILELLKHFWASYPITTTYLYAKVNRLKDAMSN
IYPQLEEIKGSVPSELRHQVSLLVRPMHQALDAAIQHYEASMQKRSAQSGERPNGYV
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcactcacgtgactaagcgagctaagtataagaccacaatcaaggatccagga
actcccggtactcttagaatgacctttgagaaaattttatttgtgcctcataatcctaaa
tcagctggaaagcttgatgtggagtttcgatacattaaaggccaaaagcatacgaaggaa
ggatcaaataagccgccatggcttaatcttactaacaatcagaatgggagtttcatcttt
gagttcgaaaattattcagatctccaagaatgtcgagattttgtgggaaaagttcttgca
aagggtggagaagtttctgaaaaacctactgttgcatatcctgatgagcaactcagtgcc
gctgaaatggagctgcgaattaagttattacaggaagatagtgaactgcagaaacttcac
aagcaatttgtgctaagtggtgtcctcacagaaactgagttttgggcaacacgaaagaag
ttgttggatagagaggttagcaaaaagacaaaacagcggctgggtttcaaaagtgcaatg
atttctgacatcaaaccatcaactgatggtcggacaaacaaagtcacatttaatttgaca
ccagaggtcattcttcaaatatttgccgagaagccagctgttcaccgtgcattcttaagt
tatgttcctaacaagatgtcagaaaggactttctggacaaaatattttagagcagaatac
ctacatagtacgaaaaacagtattgctgctgcagcagaggctgctgaagatgaggaactt
gctgtatttctaaagcaggatgacatactggcaagtgaggcgcagaagaagatccggcgg
gttgacccaactctggacatggaggctgatgagggtgatgattatacacatcttccggat
catgggatctttcgtgaaggtaataaggaaatgacagaatcacaaaatgagctatacaaa
agatctctatcccaggatattaaccggcatgctgcggttgttcttgagggaagagctgta
gatgtggagttggaagacacgaaggctgtagcagaagcacttgctcagtcaaaacagaaa
tcatcaaataagggagagtccgatggggatataagccgtgagaggttagataggttatca
aggatgactgaaatagaagatcttcagggaccaaatactcttccactagcaccgctttgc
attaaggaccctcgggattattttgactctcaacaagctaatgcacttagaacttctgga
gatgcacttggtggaattgaacaaataaaatgtggtttgagcacccaggaggtgtatggt
tctttaagggagtccatctcatcgattaaagctatggggttgaaggagcctattgtcaaa
cctgaagttgctcatcaagtttttgatgctttgaccaatagtatctccaacaccaaatat
catattgggaaaaatcctcaagagagtgttctggatagactaccgaggaaaactaaggag
gagctattgcatcattggacatcaatccttgaactactcaaacatttttgggcatcatat
cctatcaccaccacttacctctatgcgaaggtaaacagattaaaggatgccatgtcaaat
atctatccacagctagaggagattaagggatctgtcccatcagagcttcggcatcaggtt
tccctccttgttcgtccaatgcatcaggctctagatgctgctattcaacattatgaagca
agcatgcagaagagatccgcacagagtggagagagaccaaacggatatgtgtag
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