Gossypium hirsutum (upland cotton): 107942251
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Entry
107942251 CDS
T04793
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107942251
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107942251
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
EMC7_beta-sandw
RhgB_N
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
107942251
NCBI-ProteinID:
XP_040939999
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Position
A12:60404161..60408809
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AA seq
679 aa
AA seq
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MMEKEVVLNQTHSRHTLLWLIIIFQFSLLFFSAFSAEITARKILKDKSKKSPKVRLEKTD
EKVIINNGIVEVTIEKPTGHLLGIKYNGIDNVLETKNDNDNRGYWDIVWDHDMYDKLATR
HVIIITESDELVELSFTRVWNKTKDHDISAPVTVDKRYIVRRGVPGVYMYGIFKRRKYFP
HTYIHQLRIVFKLKEDKFHFMALSDTQQRIMPRREDREHSHCQVLAYPEAVLLTNPINPK
LKGEVDDKYQYSIESKDNKLHGWIADHDAVGFWMITPSDEFRTGGPHKQDLTSHVGPTAL
SMFVSNHYMGKDIAEFYKEGVAWKKAFGPVLIYLNSATFDHAHRYRKSLWKDAKKRLSKE
IKSWPYSFAASKDYPHADHRGEVSGQLQVRDKYLHKQLMKAKSAFVGLAAPGRAGSWQTE
GKGYQFWTQTDRAGHFSIKNVRRGKYNLYAWVHGFIGNYKLDRNVSVHPGHKKNLGTLIY
DPPRSGPTLWEIGIPDRTAAEFFIPDPNPTFVNSILNHEGEKFRQYGLWDRYSDTYPHHD
LVFKVGASNYSRDWFFAHVPRRTGNDTKATTWKIKFKLQEVKKSGKYTLQMALAAANFAE
VQVRINTPDGSPHFTTNRIGYDNAVARHGIHGLYRLYSINVPGKGLRGGNNTIFLTQTRC
KDEFMAVMYDYIRLEGPAV
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaaggaggtggtgctaaaccagactcactccaggcacactcttttatggcta
attatcatctttcagttttcattgctatttttctcggctttctctgctgaaatcacagcc
agaaaaatcctcaaagataaaagcaagaagtctcccaaagtccgtttggaaaaaactgat
gagaaagttattattaataatggaattgttgaagtaactatcgagaaacctactggtcat
ttgttaggaattaagtataacggaatagataatgtgcttgaaaccaaaaacgacaacgat
aatagagggtactgggatattgtgtgggatcatgatatgtatgacaaattagctacacga
catgtcattatcattacagaaagtgatgagttagttgagctttccttcactagagtgtgg
aacaaaacaaaagaccatgacatctcagctcctgtaaccgtagacaaaaggtatatagta
cggcgaggagttccaggggtgtatatgtatggtattttcaagcgacgaaaatattttccc
catacttatattcatcaattaaggatcgttttcaagctcaaggaagacaagtttcatttc
atggcgttatcagacacgcaacaaaggatcatgcctagacgagaagatcgagaacatagc
cactgtcaggttcttgcttacccagaagctgttttattgactaatccaatcaatccgaaa
ctcaaaggagaggttgacgataagtaccagtattcgattgagagcaaagataacaagctt
cacgggtggatagcggatcacgacgctgtcggcttttggatgatcacccccagcgatgag
ttccgaactggtggcccgcacaagcaggacctcacttctcatgttggtcctactgctctc
tccatgtttgttagtaatcattacatggggaaggacattgccgagttctacaaggaagga
gtggcttggaaaaaggctttcggccctgttttgatctatctaaactctgcaacttttgat
catgctcatcgttaccgaaagtcactgtggaaggacgctaaaaagcggttgagtaaagaa
atcaaaagctggccttacagtttcgctgcttcaaaggattatcctcatgctgatcatcga
ggagaagttagtggtcaattacaagtgcgagacaaatatttgcacaagcaattaatgaag
gccaaatctgccttcgtggggttggcagcgcctggacgtgcaggatcatggcaaactgaa
ggaaagggatatcaattctggactcaaaccgacagggctggtcatttcagtataaaaaat
gtccgacgagggaaatataacttgtatgcatgggtccatggtttcatcgggaactataaa
ttagaccgcaacgtcagtgtccatccaggacataagaaaaacttgggtacacttatatat
gaccctccaagaagtggtcctacattgtgggaaatcgggattcccgacagaacagctgcc
gagttcttcatacctgatccaaatccaacatttgttaactcgatcctcaaccatgagggt
gaaaaatttagacaatacggattatgggatcggtactcagatacttatcctcaccatgat
cttgtcttcaaagttggggctagcaattattccagggattggttctttgctcatgttccc
aggcgcacaggaaacgataccaaggcaaccacatggaagatcaaattcaaactgcaggaa
gtgaaaaagtctggaaaatacactctccaaatggccttggcagccgctaactttgctgag
gttcaggttcgaatcaacacaccagatggtagtccccattttacgacgaacagaatcggg
tacgataatgcagtagcaagacatggaattcatggattgtacagattgtatagcataaat
gtgccagggaaaggattacggggagggaacaacacgatctttctaactcagacaagatgc
aaagatgaattcatggcagttatgtatgactatattcgattagaaggacctgcagtttaa
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