Gossypium hirsutum (upland cotton): 107942804
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Entry
107942804 CDS
T04793
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107942804
04121 Ubiquitin system [BR:
ghi04121
]
107942804
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107942804
Membrane trafficking [BR:
ghi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
107942804
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107942804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_2
Zn_ribbon_19
zf-RING_11
zf-C3HC4
zf-rbx1
zf-ANAPC11
zf-RING_UBOX
zf-C3HC4_3
zf-RING_6
zf-RING_5
zf-RING_10
zf-C2HC5
Motif
Other DBs
NCBI-GeneID:
107942804
NCBI-ProteinID:
XP_040941731
LinkDB
All DBs
Position
A13:109412552..109415217
Genome browser
AA seq
372 aa
AA seq
DB search
MEEAMAENYWCYQCSQVVTPIMGIEIKCPFCQGGFIEQMSSGTRGSEDMDSDMGSDRALS
LWAPILLGMIGNPRLRRRFDRIDFEEENNENDNDNGEGRHEGNTDLDQELESIIRRRRRS
SATILQLLQGIRDGMASEVENAANDRDQGMGTSRDRDRERERVILINPFNQTIIVQGPYD
SSQSGLSQNSNHTRSLGDYFMSPGLDLLLQHLAENESNRYGTPPTQKEAIEALPTVKIEE
MLQCSVCLDDLKTGNVAKEMPCKHKFHGECILPWLELHSSCPVCRYQMPTDESKLDSERP
RANTNRRESGNNVRGSSEEGERDGRNGSGRRFSIPWPFNGLFSSGSQSSGANSSDTSSSS
QSTTTSQRDEKN
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagctatggcagaaaattactggtgttaccaatgctctcaagtggtgacccct
attatgggaattgagattaaatgcccattttgtcaaggtgggtttattgaacaaatgagc
agtggtacaagaggcagtgaagacatggattctgatatgggatcagaccgagcactatct
ttgtgggcaccaatcttgttaggtatgattggtaatccccgtcttcgtagaagatttgat
cgtattgactttgaagaagagaataatgagaatgacaatgataatggtgaaggtcgccat
gaaggaaatactgatttggaccaagagctcgaatccatcattagaaggaggaggagaagc
tctgctacaattttgcaattgcttcaaggtattagagatggaatggcatccgaagtggag
aatgctgcgaatgatagagatcagggtatgggtacgagcagggatcgggatagggaaaga
gagcgtgttattttgatcaatcctttcaatcagactatcatcgtccaaggtccttacgat
tccagtcagagtggtctgagccaaaactcgaaccatacaaggtctttaggcgactatttc
atgagtcctggactcgacttattgttgcaacatctggcagagaatgaatcgaacagatac
ggaactccaccaacgcaaaaagaggcaatcgaagctttgcccaccgtgaaaattgaggag
atgctgcaatgttctgtgtgcttggatgatctcaagaccggtaacgtggcaaaggaaatg
ccatgtaaacataagttccatggcgagtgtatactgccatggttggagctccatagttct
tgtccggtttgtagatatcaaatgcccacagacgaatcaaaactggattccgagagacca
agggctaataccaatcgaagagaaagcggaaacaatgtgcgcggtagcagcgaagagggc
gaaagagatgggagaaacgggagcgggagaaggttctcaatcccgtggccattcaatggt
ttgttctcgtcaggatctcaatctagtggagccaattcttccgatacttcatcgtcgtct
caatccacaactacttcacaaagagatgagaaaaattga
DBGET
integrated database retrieval system
