KEGG   Gossypium hirsutum (upland cotton): 107943084
Entry
107943084         CDS       T04793                                 
Name
(RefSeq) UBP1-associated protein 2B-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107943084
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107943084
   03041 Spliceosome [BR:ghi03041]
    107943084
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     107943084
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107943084
Spliceosome [BR:ghi03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    107943084
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 Cut8 DNA_pol_phi Merozoite_SPAM DUF7198
Other DBs
NCBI-GeneID: 107943084
NCBI-ProteinID: XP_016732305
UniProt: A0A1U8MZT1
LinkDB
Position
D03:complement(48932700..48935572)
AA seq 498 aa
MARKRKQSSSDSEPPKIASEPQPVQEKQRQQPVYIPEDPNPNPNVDEEQQILEVEEEIEE
EVEVEEEFEEEEEEEEEEEEEDDEDDEEAENETLVGSSYAAVLNGAPREAGREDESDDEP
VEKILEPFAKDQLITLIKKAVENHPDFISSVREFADADPAHRKIFVHGLSWDTTAETLTA
EFSKYGEIEECKAVTDRVSGKSKGYAFILFKHRSGARRALKQPQKKIGIRTTSCQLAAQG
PVPAPPPTGPPVSEYTQRKIFVSNVSPELDPEHLLEFFKQYGEIEEGPMGLDKQTGKPKG
FALFVYRSVESAKKALEEPHKNFQGHVLHCQKAIDGPKQTKGVSGGHHQQYQHHHQGQHQ
SQSHYHHAKKGKYSTGGSETGHLMAPSGPAGAGFNHCVAAAGFNPGVAAAAPGLNPALGQ
ALTALLTSQGAGLGIGNLLGGFTGAAANQGAHAAGYGNQVAGGYGNQMGVQGGYHNPQLG
QGGAGRSQPGGGAPYMGH
NT seq 1497 nt   +upstreamnt  +downstreamnt
atggccagaaagcgaaagcaaagctcctctgactcagaacccccgaaaatagcgtcggaa
cctcaaccggtccaagaaaaacagcggcaacaacctgtatacatacccgaagatccgaac
ccgaatccaaacgtggacgaagaacagcaaatactagaagtggaagaggaaatcgaagaa
gaagtagaagtagaagaggaatttgaagaggaggaggaggaggaggaggaggaggaggag
gaagatgacgaggacgacgaagaagcggaaaacgaaaccttagtaggttcatcatacgcg
gccgtcttaaacggagcacccagagaagcgggtcgagaagatgaatccgacgacgaaccg
gtcgagaaaattctagaaccgttcgctaaagatcaattgattacccttattaaaaaagcg
gtcgagaatcacccggattttatctcgtcggttcgggagttcgcggatgcggacccggcc
catcggaagatcttcgtacacgggttgagttgggataccactgccgaaacccttaccgcc
gagttttcaaagtacggcgagatcgaagaatgcaaagcggttactgatagggtttccggg
aaatcgaaagggtacgcttttattctatttaaacataggagtggggcgcggcgggctttg
aaacagccacagaagaagatcggtattcgaaccacttcttgtcagctggcagcgcaagga
ccggttcctgctccgcctcccactggtccaccggtttccgagtatacccagaggaagatt
tttgttagtaacgtatcgcctgaattggacccggagcatttgcttgagttttttaaacag
tatggggaaattgaagaaggtccaatggggcttgataagcagacagggaaacctaaaggg
tttgctctttttgtatataggtcggtcgagagtgcaaaaaaagcgttagaggagcctcat
aagaattttcaaggtcatgttcttcattgccaaaaggccattgatgggccaaaacagact
aaaggtgtttctggtgggcatcatcagcagtatcagcatcatcaccaagggcaacatcag
agccagtctcattaccatcatgctaagaagggaaagtattcgactggtgggtcagagact
ggtcatttgatggcaccatcagggcctgctggagctgggttcaaccattgtgttgctgct
gctgggtttaaccctggagtggctgctgctgcaccgggtttaaaccctgctctgggacaa
gctttgactgcgttgctcacttcacagggagctggtttggggatcggtaatctgcttgga
gggtttactggtgcggctgcgaaccagggagcacatgctgccggttatgggaatcaggtt
gcaggaggctacggaaaccagatgggggtgcagggtgggtatcataacccacaattgggg
cagggcggtgctggtaggtctcaacctggtggtggtgctccttatatgggccattag

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