Gossypium hirsutum (upland cotton): 107943176
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Entry
107943176 CDS
T04793
Name
(RefSeq) protein argonaute 4
KO
K11593
eukaryotic translation initiation factor 2C
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107943176
03036 Chromosome and associated proteins [BR:
ghi03036
]
107943176
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107943176
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107943176
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
107943176
microRNA pathway
RISC loading complex
107943176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
107943176
NCBI-ProteinID:
XP_016732406
UniProt:
A0A1U8N027
LinkDB
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Position
A08:120643668..120651061
Genome browser
AA seq
913 aa
AA seq
DB search
MDSFEQDGNGAAPDSLPPPPPVPPDVVPIKAEPEPAKKKVVRVPMARRGLGSKGQKITLL
TNHFKVNVGSSDGHFFHYCVSLYYEDGRPVDGKGVGRKVIERVQETYGNELAGKDFAYDG
EKSLFTVGALPNNKHEFTVVLEDVTSNRNNGNASPDVHDDSNGQDRKRIKRPYQSKTFKV
EISFAAKIPMQAIQNALRGQESENSQEALRVLDIILRQHAAKQGCLLVRQSFFQNNPDNF
TDIGGGVLGCRGFHSSFRASQGGLSLNIDVSTTMIIRPGPVVDFLLANQNARDPYSLDWT
KAKRSLKNLRIKVSPSNQEYKITGLSEQLCKDQLFSLKQKSMKNDNGEAENLQITVYDYF
VNHRNIQLRYSADLPCINVGKPKRPTYIPLELCSLVSLQRYTKALTTFQRASLVEKSRQK
PQERMTVLSSALQRSNYGAEPMLRSCGVSISTNFTQVEGRVLPAPRLKVGNGEDFFPRNG
RWNFNNKKLVEPTKIERWAVVNFSARCDTNSLVRDLIRCGDMKGIRIDPPFDVFQESNQN
RRCSPLVRVEKMFEDIQSKLPGAPQFLLCLLPDRKNSDLYGPWKKKNLSEFGIVTQCMAP
TRVNDQYLTNLLLKINAKLGGLNSMLAIEQTPSIPVVSKVPTIILGMDVSHGSPGQSDIP
SIAAVVSSRQWPLISRYRASVRTQSPKLEMIDSLFKKVSDKEDEGIMREVLLDFYTSSGK
RKPDQIIIFRDGVSESQFNQVLNIELDQVIEACKFLDESWNPKFVVIVAQKNHHTKFFQQ
GSPDNVPPGTVIDNKICHPKNNDFYLCAHAGMIGTTRPTHYHVLLDQIGFSADDLQELVH
SLSYVYQRSTTAISVVAPICYAHLAASQVGTFMKFEDTSETSSSHGGVTAPGAISVPQLP
RLKENVCNSMFFC
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggactcgtttgagcaggatggaaatggggcggcacctgactctctgcctccaccccca
cctgtgcctcctgatgtggtgcctatcaaagcagaacctgaacctgcaaagaagaaggtt
gtgcgagtcccaatggccaggcgtggtcttggatctaaagggcagaagataactcttctc
accaatcacttcaaagtgaatgttggaagctctgatggacacttcttccattactgtgtt
tctctttattatgaagatggccgtccagttgatggtaagggtgttggaagaaaagtgata
gagagggtgcaagagacctatggcaatgaattggctggaaaggactttgcttatgatggg
gagaaaagtttatttactgttggtgctcttccaaataacaagcatgagtttacagttgta
cttgaggatgttacatctaacagaaacaacgggaatgcaagccctgatgtccatgatgac
tcaaatgggcaagacaggaagaggattaaacggccttatcagtcaaagacctttaaagtg
gagatcagctttgctgcaaagattcccatgcaagccattcaaaatgctctgcgtggacag
gaatcagaaaactcacaagaagccctaagggtgttggatatcattttacggcagcatgct
gcaaaacagggatgtctacttgttcgccagtcattctttcaaaataatcctgataatttt
acagacattggaggtggtgtcctaggctgcaggggtttccattctagcttcagagcctct
caagggggcctttccctgaatattgatgtctcaactaccatgataattcgtcctggtccg
gttgtggactttttgcttgccaatcagaatgccagagatccgtactccctggactggacc
aaggctaaacgaagccttaagaacctgaggataaaagtcagtccatccaatcaggagtac
aagatcactggattgagcgagcagttgtgcaaagatcagttgttttcattgaagcagaaa
agcatgaagaatgataatggtgaagctgagaatctacagattactgtctatgattatttt
gtcaaccatcgcaacatacagttgcgctattctgcagacctgccatgcattaatgtcgga
aagccaaaacggccgacatatattcctttggagctctgttccctggtgtctttgcaacgt
tacaccaaagcgctaaccactttccagagagcttctttggttgaaaaatcaagacagaag
cctcaggaaagaatgacagtcttatccagtgctttacagagaagcaactatggtgctgag
ccaatgctgcgttcttgtggtgtttctatcagcactaatttcacccaagtcgaaggtcgt
gttctgccagcgccaaggttaaaagtggggaatggtgaagatttctttcctaggaatggg
agatggaattttaataacaagaaattggtggagccaactaagattgaaagatgggctgtt
gtcaacttctcagcacgatgtgatacgaatagccttgtccgggatctgattagatgtgga
gacatgaaaggaattcgaatagaccctccatttgatgtgttccaagaatccaatcagaac
agacgttgctctcctttggttagagtcgagaaaatgtttgaggatatccaatctaaactg
cctggagctccacagtttcttctttgtcttttacctgataggaaaaattctgatctttat
ggtccatggaagaagaagaatctttctgagtttggcatagtcactcagtgcatggctcca
actagggtcaatgatcagtaccttacaaacctgcttctaaaaatcaatgcaaagcttgga
ggactgaattccatgttagcaattgagcaaacaccttcaattccagttgtttcaaaggtt
ccaaccatcatccttggcatggatgtgtctcatggctctcctgggcagtctgatattcca
tcaattgctgcggtggtcagctcccggcagtggcctttgatttcccgctatagagcatct
gtgcgtacacaatctcctaagcttgaaatgatagattctctattcaaaaaagtctctgac
aaggaggatgaaggtatcatgagggaggttctcttggacttttatacaagttcaggaaag
aggaagcctgatcaaattatcatattcagggatggagttagcgagtcgcagttcaatcaa
gtattgaacattgaactggatcaagtaattgaggcttgcaaatttcttgatgagagttgg
aaccccaagtttgtggtcattgtggcacagaaaaaccatcatactaagtttttccagcag
ggatctcctgacaatgtcccgcctggaaccgttatagacaacaaaatctgtcatcctaag
aacaatgacttctatctttgtgcccatgctggaatgattggaaccacgaggcctactcat
tatcatgttctcttagatcagattgggttttcagctgatgatctgcaggaactagtccat
tctctgtcgtatgtgtatcaaaggagcaccactgccatatctgtagttgctcctatttgc
tatgcacatttggcagcctcacaggtgggtacattcatgaagtttgaagatacctcagag
acatcctcgagccatggtggagttactgcacccggagccatttctgtccctcagctgccg
aggttgaaggagaacgtctgcaattccatgttcttctgctga
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