Gossypium hirsutum (upland cotton): 107943306
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Entry
107943306 CDS
T04793
Name
(RefSeq) pentatricopeptide repeat-containing protein At2g15820, chloroplastic
KO
K27936
pentatricopeptide repeat-containing protein, chloroplastic
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107943306
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107943306
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LAGLIDADG_2
PPR_2
PPR
PPR_1
PPR_long
ARM_TT21_N
AEP1
Tn7_Tnp_TnsA_C
Motif
Other DBs
NCBI-GeneID:
107943306
NCBI-ProteinID:
XP_016732545
UniProt:
A0A1U8N0F8
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All DBs
Position
A01:505326..508946
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AA seq
836 aa
AA seq
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MDMQQMIIAANRAQCFVSPPLSTLIITINTPSLNPNKPSKTPMRTSLSFLRLFRPLSRSQ
TALFRPLTRRYAAPRFCPSFSRHFSVSSAPFSASAVGFVDEKEREEEERWDFSNNETEAK
FVFEDNDGVFADNDMKHLVAPDIEVKELDELPEQWRRSKLAWLCKELPAHKAGTLVRILN
AQRKWLKQEDATYLAVHCMRIRENETGFRVYKWMMQQHWYRFDFALATKLANYMGKERKF
TKCREIFDDIINQGCVPSESMFHILIVAYLSTPVQGCLDEACGIYNRMIQLGGYQPRLSL
HNSLFRALLNRPGGSSKYYLKQAEFIFHNLETCGLEIQKEIYTGLIWLHSYQDTVDKERI
KSLRKMMRESGMEEGKEVLISILRACSKDGDIEEAERTWIKLLGSNDSIPSQAFVYKMEV
YSKVGEITKSLEVFREMKKCLGYTSIASYHKIIEVLCESEQMDLAESFMKELIESGMKPL
MPSYIKLTDTYLRLNCHDKLESTFLECLEKCRPNRTIYNIYLSSLVKVGNLGKAEEIFNH
MGENVTIGVNAKSCNTILCGYLSSGDNSKAEKIYDLMCQKKFEIESPLMEKLENVLRSSR
KEVKKPLSLKLSKEQREILMGLLLGGLRIDSDEKRKNHMIRFEFNPSSIPHSILKRHIHD
QYHEWLHPSSKLTAGDGDIPHKFNTISHSYFGFYADQFWPKGQPVIPKLIHRWLSPIVLA
YWYMYGGYRTSAGDILLKLKGSSEGVEKVVKTLKSKSLNCRVKRKGRVFWIGFLRTDSMW
FWKLVEPYILDDLKDFLKAGSETADDCAVESRDINFDSASDSDEKGSSDCSEDVNP
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcagcaaatgataatagcagcaaacagagctcaatgcttcgtttccccgcct
ctttcaaccctcataatcaccatcaataccccttctttaaaccctaataaaccctccaaa
acccccatgcgcacttccctctctttcctccgcctcttccgccctctttcccgctctcaa
accgcccttttccgccccctcacccgtcgctacgccgcgcctcggttttgcccttctttt
tcccgccacttcagtgtatcttcagccccattctcagcctccgccgtcggtttcgttgac
gaaaaggaaagggaagaagaagagaggtgggatttctccaacaacgaaaccgaagcgaaa
ttcgttttcgaagacaatgatggagttttcgcggataacgatatgaagcacttggtggca
ccggatattgaggttaaggaactagacgagttgccggagcagtggcgaaggtcaaagctc
gcttggctttgcaaagagttgccggctcataaggcgggaaccttggttaggatcttgaat
gcgcaaaggaagtggctcaagcaagaggatgctacttacttggctgttcattgtatgaga
attcgagaaaatgaaactggtttcagggtctataagtggatgatgcagcagcattggtat
cgattcgattttgctcttgctaccaagctagcaaattacatggggaaggagaggaagttt
acgaaatgtcgggagatattcgatgacatcatcaaccagggatgtgtgcctagtgagtct
atgtttcatattctgattgttgcatatcttagtacaccggttcaaggttgtttagatgag
gcttgtggtatttacaatcgtatgattcagttaggaggataccaaccacgtcttagctta
cataactcgcttttccgagctcttttaaacagaccgggaggttcttcgaaatattactta
aaacaagccgagtttatctttcacaatttagaaacatgtggtttagagatacaaaaagaa
atctataccggcctaatttggttgcatagctatcaagatacggtggataaagaaaggata
aaatcgttgaggaaaatgatgcgagaatcgggtatggaagaaggaaaagaagtgctcatt
tcgatattgagagcttgttcgaaggatggggatattgaagaagccgaaagaacttggatc
aaactactcggttccaatgatagtatcccttctcaagcttttgtctataaaatggaagtt
tattcaaaggttggggaaattacgaaatctttggaggtattccgggagatgaaaaagtgt
ttggggtatactagcatcgcatcataccacaaaattatagaggtattatgtgaatccgag
caaatggaccttgcggaatcgttcatgaaggaactcattgagagtggtatgaagccactt
atgccatcgtacatcaagctaacagatacatacctccggttgaactgtcacgataagctc
gagtcgacctttttagagtgccttgagaaatgccgaccgaatcgtactatttataatata
tacttgagctcgttggtgaaagtcgggaatctcggcaaagcagaggaaattttcaatcac
atgggcgagaatgtcacaattggtgttaatgcaaaatcatgcaataccattttatgtgga
tacctttcttccggagataattcgaaagcagaaaagatatatgatttgatgtgccagaag
aaattcgaaattgaatctccgttgatggaaaagttggaaaatgtccttagatcgagccga
aaagaggttaagaaacccttgagcttaaagctaagcaaagaacaacgagagattttaatg
gggttgcttttaggcggtttacggatagactcagatgaaaagagaaagaaccacatgata
cggttcgagtttaatccaagttctataccacattctattttaaagagacatattcacgat
caataccacgagtggttacatccttcaagtaagctaactgccggtgatggtgatatcccg
cacaagttcaataccatttcacactcttatttcggtttctatgcggaccagttttggcca
aagggtcaacccgtgatcccaaaactaatacaccggtggctgtctccgattgtacttgca
tactggtatatgtatgggggctacagaacatcagccggtgatatccttttgaaactgaaa
gggagcagcgaaggcgtcgagaaagtggtgaaaacgttgaaatcaaaatccttgaattgc
cgagtgaagcgaaaagggagagtgttttggatcggatttctcaggacagattcaatgtgg
ttctggaaactggtggaaccttacatcttagatgacttgaaagattttctcaaagcaggc
agcgaaaccgcagatgattgtgcggtcgaatctcgagacataaactttgacagtgcatcc
gattccgatgaaaagggttcttctgattgtagcgaagacgttaatccataa
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