Gossypium hirsutum (upland cotton): 107943711
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Entry
107943711 CDS
T04793
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial-like
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ghi03016
]
107943711
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
107943711
Transfer RNA biogenesis [BR:
ghi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
107943711
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-GeneID:
107943711
NCBI-ProteinID:
XP_016732980
UniProt:
A0A1U8N1Q9
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Position
D09:45697286..45702603
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AA seq
793 aa
AA seq
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MMAVRAVNGGSLFRSAASPPLLTFGCRFRQFSSLPFRRNSELGLRFPIFCCGNQFLGYGG
GLSRSVHSIVDCVMEELTAWRSRRRIRATVKLTTSGELLEDKLVNQEIEKGLLLEFKKDS
DRVLLGVAQRPDGKKNWMVYDQNGVTSSIKPQQITYIVPGVENFDHAEISKFLQKAQENL
DPTLLEIAWVELLEKNASVTAEELAEMIFGSSEPLESYCAHLLLSKDEVYFTVLATKGSR
TIYGPRPTVQVEELLHKKLAKDASEKELQDFVQLLVSAKAKAALAKPSKSSWMMDEKILY
KIESLEAYAIDACKSDEQRKTAGMILKAMGLTKTASSALNLLINIGYFPVHVNLDLLKLN
ILTDHSDEIIAAAESLLSDSSDSDEMNREDLTHLKVYAIDVDEADELDDALSATKLQDGR
MKIWIHVADPTRYVEPGSMVDREALRRGTSVFLPTGTYPMFPEKLAMEGMSLKQGELCNA
VSVSVILHSDGSIAEYSVQNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLK
WRRQQGAIDTSTLEARIKVVNPEDLEPSINLYVENQADPAMRLVSEMMILCGEVVATFGS
RNNIPLPYRGQPQSNIDVSAYSHLPEGPVRSSAIVRIMRAAEIDFRKPIRHGVLGLPGYV
QFTSPIRRYLDLLAHYQVKAFLRGESPPFSAGQLEGMASIVNMQVRVVRKLSASSLRYWI
IEFLRRQPREKKFRALILRFIKDRITALLLVEVGLQASAWVSIGSQVGDEVEVQVEEAHP
RDDVLYLKEVLRN
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgatggctgttcgcgccgtcaacggtggttctttgtttcgttccgccgcttcgcctcct
ctgttgacgtttggctgccgtttccgccaattcagctccttaccgtttcgccgaaactct
gagttagggcttcgatttcctattttttgttgcgggaatcagtttctaggatatggcggt
ggcctttcgcgttcggttcatagtatcgttgattgcgtcatggaagagctaacagcttgg
cgcagtcgcagaagaattcgcgccactgtcaagctaacgactagtggtgagcttcttgaa
gataagcttgtcaatcaagaaatagaaaagggattgctgctggagtttaagaaggattca
gatagggtattgctcggagttgctcagagacctgatggaaagaagaactggatggtgtac
gatcagaatggtgtcacatcatctatcaaaccacaacaaattacatatattgttccaggt
gtagaaaattttgatcatgctgagatctcaaaatttctccaaaaagctcaggaaaacttg
gacccaacattgcttgagattgcttgggttgagcttcttgaaaagaatgcgtcagtgaca
gctgaagaattggccgagatgatatttggtagttcagagcctcttgagagctattgtgcc
catcttttgctatcaaaagatgaagtatacttcactgtgctggcaacaaaaggttctcgt
accatttatgggcctcgaccgacagtacaagtggaagaacttttacacaagaagcttgcc
aaggatgcctctgagaaagaacttcaggactttgtacaattacttgtctctgctaaagca
aaggctgcactcgctaaaccttccaaatcttcctggatgatggatgagaaaatcctatac
aaaattgaatcccttgaagcatatgccattgatgcctgcaaaagtgatgagcaaaggaaa
actgctggaatgatcctgaaggcaatgggactaacaaaaacagcatcctctgcactaaac
cttctcataaacattggttattttcctgtgcatgtcaatcttgatctgttaaagttaaat
attcttacagatcattctgatgagatcatagctgctgctgaaagtcttctgtctgattca
tctgactcagatgagatgaacagagaggatcttactcatttgaaggtctatgctattgat
gttgatgaggctgatgagcttgatgacgccttaagtgcaacaaagttgcaagatggccgc
atgaaaatatggatacatgttgcagatccaactagatatgttgaacctgggagcatggta
gacagggaagcactgagaagaggaacctctgttttcttgccgactggcacttatcctatg
tttcccgagaaacttgctatggagggaatgagtttgaaacaaggagaactttgcaatgcg
gtcagtgtttctgttatcctgcactctgatggcagcattgcagagtattcagttcaaaac
tcgattattaaaccaacttatatgctgacctatgagagtgcaactgagctgcttcatttg
aacctggaagaggaggctgaactgaagattctatctgaagcagctgctctaaggttaaaa
tggcgtcgccagcagggtgcaattgatacatccaccctagaagctcgcattaaagtagtt
aacccagaagaccttgaaccatcaattaatctttatgttgaaaaccaagcagaccctgca
atgcggcttgtttctgagatgatgatactttgtggagaagttgtagccacatttggatct
cgcaataacatccctttaccctatagaggacaaccacagtcaaatattgatgtttctgca
tattcacatcttcctgaagggccagttcgaagctctgccattgttagaataatgcgtgca
gctgaaattgatttcaggaagcctattcgtcatggggttcttggacttcctggttatgtt
cagtttacatcacccatccgtagatatttagatctccttgctcactatcaggtgaaggca
tttcttagaggtgaatctccacctttttcagctggtcaactagaagggatggcatcaata
gtaaatatgcaagttagagtagtaagaaagctctcagccagcagtctccggtattggata
atagagtttctgagaaggcagccaagggagaaaaaatttcgtgcattgatccttagattc
atcaaggacaggattacagccttattacttgttgaggtgggacttcaggcatctgcatgg
gtgtctataggatctcaggtaggagatgaagtagaagttcaagttgaagaagcgcatcct
cgcgatgatgttctttaccttaaggaggttctaagaaactga
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