Gossypium hirsutum (upland cotton): 107943956
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Entry
107943956 CDS
T04793
Name
(RefSeq) endoribonuclease Dicer homolog 2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107943956
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107943956
microRNA pathway
RISC loading complex
107943956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
ResIII
Dicer_dimer
Helicase_C
DEAD
PAZ
dsrm
SWI2_SNF2
SNF2-rel_dom
Cas3-like_C_2
Helicase_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
107943956
NCBI-ProteinID:
XP_040948229
LinkDB
All DBs
Position
D05:58306272..58315275
Genome browser
AA seq
1395 aa
AA seq
DB search
MEPVDMEKDISQLHPADPLPFARSYQLEALEKAIKQNTITYLETGSGKTMIAIMLLRSYA
HLIRKPSPFFAVFLVPKVVLVKQQADAVEMHTDLNVGKYWGDMQVDFWDGEKWKQEIDKY
EVLVMTPQILLDGLRHSFFKINMIKVLIIDECHHARGNHPYASIMREFYHRHLEAGASNL
PRIFGMTASPINSKGANSADSYWQKIHELETIMNSKVYTCESESVLAQFVPFSTPKFKFY
QHMEIPNVLYAHLVEELTVLKVKHECSLDNLDLEASAAESTRKKLSKIHSALIHCLHELG
VWLALKAAECFSCYESEHLMWGKLDVFGEKIIRSYSVDAFHAIETCMPSGLDWTIANDVK
GSVAAGFLTTKVLCLIESLFEYRVLKDIRCIIFVERVITAVVLQSLFSELLPRYSNWKTN
YIAGNNSGLQNQTRKKQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLIIRFDPSPTIC
SFIQSRGRARMQNSDYLLMLKSGDFSTHSRLKNYLTSGDVMRKESLRHASNPCSPLSKGL
DDEEFYQVASTGACMTLSSSVGLMYFYCSRLPADGYFKPIPRCVIDKQMGLCTLLLPKSC
PIQTVCVQGNIKNLKKIACFEACKKLHQIGALTDNLVPDIVFEENDVEEFEKEPYNDDQP
IFFPPELVNKGSLDSMTKYYCYLMELKQNFDYEVPVHNIMLLVRNQFDMDEKSVNIELEV
DRGTLTVNMKYIGLIRLNSDQVILCRRFQLAVFQVLMDRKAEKLAEVLCDHTLGNNSEID
YLLLPSNYVGQSPLIDWLSVTSVTFSYEKAWKNHVNCNAGMIQTKSSLVCTCMVQNSLVF
TPHNGHAYIISGLLTNINANSLLRLSDGRLMTYKEYYEQRHSINFCYSEVSFLAGRHIFP
VQNHIQRCRKQKEKESSNALVELPPELCCVVMSPISVSTFYSFTFLPSIMHRLESLLLAT
SLKKMHLDHCVQNIAIPTMKVLEAITTKKCLENFHLESLETLGDSFLKYAVCQQLFKKYQ
NHHEGLLSIRKDKIISNTALSMLGCDKKLPGFIRDEPFDTKDWMIPGYNCGNYSLNEETL
CNAKKIYVRGRRKLKCKKVADVVEALIGAYLSTGGEAAGLLFLDWIGISIDFTNIPYERH
FKVRAEKFVNVQHFESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYL
ITLHLYNKYPGITPGLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVES
FQELSLEYTFGWESEKSFPKVLGDVVESLAGAIFVDSGYKKEIVFQSIRPLLEPMITPET
MTVHPVKELYELCQKEHYELRKAIVSQEDGISSITIEVEANGKVFKHTSTACDKKMAKKL
ASKEVLKSLKGANFS
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggagccagttgacatggagaaggacatttctcaactacaccctgctgatcctctccct
tttgccagaagctatcagcttgaagcattagagaaagctatcaagcaaaacacaataact
tacttggaaactggatctggcaagacaatgatcgccatcatgcttctccgcagctatgcc
catcttattcgcaagccctcacctttttttgctgtcttcttggttcccaaagttgtcctg
gttaaacaacaagctgatgctgtggaaatgcatacggacttgaatgttggaaagtattgg
ggagatatgcaggtcgacttttgggacggggagaagtggaagcaagaaatagataaatat
gaggtgcttgtgatgacacctcagattttacttgatggattgaggcatagcttcttcaag
ataaacatgataaaggttttgataattgatgaatgccaccatgcccgaggaaatcaccct
tatgcctctattatgagagaattctatcatcgccatttagaagctggtgcatctaatctt
cctaggatttttgggatgactgcttctcctataaattcaaaaggggcaaactctgctgat
agctattggcagaagatccatgaattggagacgattatgaactcaaaggtgtatacatgt
gaaagtgaatcagtgcttgctcagtttgttccattttctactccaaagttcaagttttac
caacatatggaaattccaaatgttctatatgcacacttggtagaggaattgactgttttg
aaagtaaagcatgaatgttcgttggataatttggatcttgaagcttctgcagcagaatct
acaagaaagaaactatcaaagatacattcagctttaatacattgtctacatgagcttggt
gtttggttggctttaaaggctgcagagtgcttttcatgttatgaaagtgagcatcttatg
tgggggaaattggatgtctttggcgagaaaattattaggagctacagtgtggatgctttt
catgcaattgaaacatgcatgccatctggtctggattggaccatagctaatgatgttaaa
ggcagtgtggctgctgggtttcttaccacaaaagttttatgccttattgaatctctattt
gaatacagggtgttgaaggacataagatgtataatttttgttgagagggttataacagct
gttgtgcttcaatcgctatttagtgaattacttcccaggtacagtaattggaagactaat
tacattgcgggaaataactctggattgcagaatcagacaaggaaaaaacaaaacgaaatt
gtagaagaattccgcaaaggcatggttaacataatcgttgcaacttcaattcttgaagaa
ggcttggatgttcaatcatgcaacctaattatcagatttgatccttcaccaacaatttgt
agtttcatacagtctcgaggacgtgctagaatgcagaactcagattatctattaatgctg
aagagtggggacttttctacacattctcgactgaagaactatcttactagtggagatgta
atgagaaaggaatctttacgccatgcatccaatccttgttctcctcttagtaagggctta
gatgatgaagagttttaccaagttgcgagtacaggggcatgtatgactcttagttctagt
gttggtctaatgtacttctattgctcacgtctccctgcagatgggtattttaaacctatt
ccgaggtgtgttattgacaagcaaatggggctttgcaccctcctcctacccaagagttgc
cctatacaaactgtttgtgttcagggtaatataaaaaacctaaagaaaatagcttgcttt
gaagcatgcaagaaactccatcaaattggtgctttaacagacaatcttgttcctgatatt
gtttttgaagaaaatgatgtggaagaatttgaaaaggagccctataatgatgatcaacct
attttctttccacctgaactagtgaataagggttcactggactccatgacaaagtactac
tgctatttaatggagttgaagcagaactttgattatgaggttcctgttcataacatcatg
cttcttgtcaggaatcagtttgacatggatgaaaaaagtgtgaatattgagttagaagtt
gacaggggcacattaacagttaacatgaaatatattggactaatacgtcttaattctgac
caggttatcttatgtagaaggtttcagcttgcagtttttcaagtacttatggatcgtaaa
gctgaaaagttggcagaggtgttatgtgaccataccttggggaataattccgaaattgat
tatctactcctcccatcaaattatgtgggccagagtcctctgattgattggttgtcagtt
acttctgtcacattttcttatgaaaaggcctggaagaatcatgtgaactgcaatgctggt
atgatacagaccaaaagcagtctggtgtgcacttgcatggtccaaaattcgttggtcttt
actcctcataatggtcatgcttatattatcagtggtcttttaactaatataaatgcaaat
tcacttttgaggttgagtgatggacgcttaatgacttacaaggagtattatgaacaacgc
cacagtatcaatttctgttatagtgaagtctctttccttgctgggcgacatattttccct
gtgcaaaatcacattcaaaggtgcagaaaacaaaaagagaaagaatcaagtaatgcattg
gtagaattgcctcctgagctttgttgtgtagtaatgtctcccatatcggttagcacattt
tattcattcacatttcttccgtcaatcatgcatcgactcgagtctttgctccttgctacc
agcttgaaaaagatgcatttggatcattgcgtgcaaaatattgcgattccaaccatgaag
gttttggaggcaattacaaccaaaaaatgcctagaaaactttcatttggaatcactagag
actcttggtgactcttttttgaagtatgctgtttgtcagcagcttttcaaaaaatatcaa
aatcatcatgagggccttcttagtattaggaaggacaaaattatttcgaatacggctctg
tccatgctaggatgtgacaagaaacttccggggtttatccgtgatgagccttttgatacc
aaagattggatgattcctggttataattgtggaaattactcattaaatgaggaaacactg
tgtaatgcaaaaaaaatatatgttagagggagaagaaagctaaagtgtaagaaggttgct
gatgttgttgaggcacttattggtgcataccttagcacgggaggcgaagcagctggatta
ctatttttggattggatcggtataagtattgatttcacaaatataccatatgaaagacat
tttaaagtgcgggccgagaagtttgttaatgtccagcactttgagtcccttctacactat
tcattccaagacccttctttgttggtggaagcattaacccatggttcttatatgcttgct
gaaattccaggttgttatcagcggctggaatttctaggggactccgttttagattatctt
attactctgcatttatataataaatatcctgggatcacgccaggattattaacggatctt
aggtcagcatctgttaacaacaattgctatgcattatcagctgtaaaggctggatttcat
aagcacattctccaaagttcacagaagctttacaaggatataaaagaaaccgttgaaagt
tttcaggaattatcgttggaatacactttcggctgggaatctgaaaaatctttccccaag
gtactcggtgacgtggtggagtcacttgctggagctatttttgttgattcaggatacaag
aaggaaatcgtattccagagtataaggccactgttggagcccatgattactccagagact
atgacggttcaccctgtcaaagagctatatgagctctgtcaaaaggagcattatgaacta
agaaaagccattgtttcacaagaggacggcatttcttctattacgatagaggttgaagca
aatgggaaggtattcaagcacacatccacagcttgtgataagaagatggccaagaaactg
gcttccaaagaagttttgaagtctctaaagggagccaattttagctag
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integrated database retrieval system
