Gossypium hirsutum (upland cotton): 107944309
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Entry
107944309 CDS
T04793
Name
(RefSeq) coatomer subunit beta'-2-like
KO
K17302
coatomer subunit beta'
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107944309
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107944309
Membrane trafficking [BR:
ghi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
107944309
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
107944309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
ANAPC4_WD40
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Nup120_160
WD40_like
WD_LRWD1
TPR_CcmH_CycH
HEAT_GCN1
Clathrin
TPR_8
Motif
Other DBs
NCBI-GeneID:
107944309
NCBI-ProteinID:
XP_040949631
UniProt:
A0ABM3A435
LinkDB
All DBs
Position
D05:complement(11033173..11043859)
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AA seq
912 aa
AA seq
DB search
MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPV
RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE
LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKGSRRIVIGYDEGTIMVKIG
REVPVASMDNSGKIIWAKHNEIQTVNIKSVGADIEVTDGERLPLAVKELGSCDLYPQSLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESSSKIKSFSKNFQ
EKKSVRPTFSAERIFGGTLLAMCSNDFICFYSWAECRLIRRIDVTVKNLYWADSGDLVAI
ASDTSFYILKYNRDVVQSYLDSGTPVDEQGVEDAFELLHETNERVRTGIWVGDCFIYNNS
SWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVM
RGDLERANEILPSIPKEHLNSVARFLESRGMIEDALEVATDPDYRFELAIQLGKLEIARE
IAAEVQSESKWKQLGELAMSTGKLEMAEQCMKHAMDLSGLLLLYSSLGDVEGISRLASLS
KEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRRDLNK
VNPKAAESLADPREYPNLFEDWELALSVESKVAETRGVYPLAADYLNHAARSKMTLLEAF
RNMQIDDEEPLVNGVLDYEAGEPNGHGLNSEEQNGEDGSQEEPVVVDADSNDGAVLVNGN
EPEEEWVLTPDH
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgccactcagacttgaaattaagaggaaacttgctcaaagatcagagagagtaaaatcc
gtagatctccatcctactgaaccatggattctagcaagtttgtattctggaactgtctgc
atctggaactaccagtcacagaccatggctaagtcgtttgaggtcactgagttgccagtt
aggtcagcaaagtttgttgcacgcaagcaatgggttgtcgctggagctgatgacatgttt
attcgtgtatacaattacaacaccatggataaggtcaaagtatttgaggcacataccgat
tacattagatgtgtcgctgtacatcctactcttccatacgttttgtcatcatctgatgat
atgctcataaaactttgggactgggagaagggttgggtgtgtactcagatatttgaggga
cattcccattatgtcatgcaagtgacctttaatcccaaagatacaaacacttttgccagt
gcatctcttgaccgtaccataaagatttggaaccttggctcccccgacccaaattttact
ttggatgcccatcagaaaggtgtaaactgtgttgattactttacaggtggtgataagcca
tatctgatcactgggtctgatgatcacactgctaaggtatgggactaccaaaccaagagt
tgcgtccagacattggaaggccacacacacaatgtttctgcagtttgtttccatcctgaa
cttccaataattattactggttctgaggatgggacagttcgaatctggcatgctaccaca
tataggcttgaaaatacattgaattatggtcttgagagagtttgggcaattggatatata
aaaggttcacgaaggattgtgattgggtatgatgaaggaactattatggtgaaaattggt
cgtgaagttcctgtagcaagtatggacaacagtgggaaaatcatttgggctaagcacaat
gaaattcaaactgtgaatattaagagtgtaggagcagatattgaggttactgatggagaa
aggttgcccttggctgtaaaggaattagggtcatgtgatctatatcctcaaagcttaaag
cataacccaaatggtaggtttgttgttgtctgtggagatggtgagtacatcatatataca
gcattagcatggagaaataggtcatttggttcggcattggaattcgtttggtcatctgat
ggagagtatgctgtcagagaaagctcatcaaagataaaaagtttcagcaaaaatttccag
gaaaagaagagtgtccggccaaccttctctgctgagcgtatttttgggggcactttactg
gcaatgtgctccaatgattttatttgtttttatagttgggctgaatgcagattgattcgt
cggattgatgttaccgttaaaaatctttactgggctgatagtggtgacttggtggcaatt
gccagtgatacatcgttctatatcctaaagtacaatcgggatgtagttcaatcatactta
gatagtggaacaccagttgatgaacaaggagttgaggatgcatttgagcttcttcatgaa
accaatgaacgtgtcaggactgggatatgggttggggactgtttcatttacaataactct
tcatggagacttaattactgtgttggtggagaggtcaccacaatgtttcatttggaccgt
cctatgtacttgttgggatatcttgcaagtcaaagtcgggtgtatctgatagacaaagag
tttaatgtaatgggatacacgttacttctcagccttattgagtacaagacacttgtgatg
cgtggagacttggaaagggccaatgagattttgccttcaattcctaaagagcaccttaat
agtgtggctcgtttcctagaatcacgaggtatgatagaggatgctctagaagttgctaca
gaccctgattacagatttgagcttgccattcagcttggtaaattagagattgccagggaa
atagctgcggaagttcagagtgagtctaaatggaagcaattaggagaattggctatgtcc
actggaaagctagaaatggctgaacaatgcatgaagcatgcaatggacctgagtggttta
ttgctgctttattcctcattaggagatgttgaaggaatatcaagacttgcatctctttcc
aaagagcaagggaaaaacaatgttgcttttctttgtttattcatgttgggtaaattagag
gattgccttcagcttttggtggaaagtaatcggatacctgaggctgctctgatggcgcga
tcttatcttccaagcaaggtttcagagatagtagcaatctggagaagagacctcaacaag
gttaatccaaaagctgctgaatctttggctgatcctagagagtatccaaacttgtttgag
gattgggaacttgctctttctgttgaatctaaagtggcagaaacaaggggtgtttacccc
cttgcagcggattatttgaaccatgctgctagatcgaagatgacacttttggaggctttc
agaaacatgcaaattgatgatgaggagcctcttgtgaatggtgtacttgattatgaggct
ggagaaccaaatgggcatggtctgaattcagaggagcagaatggagaagatggtagccaa
gaggagcctgttgttgtagatgctgattctaacgatggtgcagtactcgttaatggtaac
gagccagaagaagagtgggtgcttacaccagatcactag
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