Gossypium hirsutum (upland cotton): 107944386
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Entry
107944386 CDS
T04793
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107944386
04120 Ubiquitin mediated proteolysis
107944386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107944386
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107944386
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107944386
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
107944386
NCBI-ProteinID:
XP_040955288
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Position
D08:961931..967868
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AA seq
547 aa
AA seq
DB search
MMRLQTYAGLSLVAMLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQI
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFLGFLLLLDCLFLSSSIKFLIQTRQASVSLFFAFEYM
ILATTIVSTFIKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYMRYRKIASNMNDRFPDATPEELAANDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTSSSGGQHGPWSDAQGQGSGT
SSARQGSGGDMAADNLTQHQARLQAAATAASIYEKSYVYPSANTLVWSPGYAVLPKAYGQ
PDDSTKGESSGEMTSTGEQFVIPGGQVNLSFPRFPHCTFVPFQLPRVNGNMGEASSSNLH
IPDSQLEAQKKIIQQQIEVSFMCHKVLQNQLQLLQMQKLKTEESADAGPTASSDRKGKTI
SSSSSGD
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcaaacctatgctggtctcagtttagtcgcgatgctagctgttatttac
catgcattcaacagtagaggccagttttatcctgctatggtgtatttatcaacctctaag
atcagcttggtgctgcttctcaacatggggcttgtatttatgtgtatcttatggcaaata
accaaaaagatattccttgggtctcttcgtgaagctgaggttgaacggttgaatgagcag
tcgtggagagaggttatggagatcctctttgcgatcactattttccgtcaggacttttca
gttacgtttcttgctatggttactgctctgttgttaatcaaggctttgcactggttggca
cagaaaagggttgagtacattgagacgaccccttctgttcctatgttgtctcacattcgg
attgtttcttttctgggtttccttcttcttctagattgtctgtttttgtcaagttctatc
aagtttctgatccaaacacggcaagcttcagtttccctattctttgcgtttgagtacatg
attctggctaccacaatagtgtcaacttttataaaatatgttttctatgtgagtgacatg
cttatggaaggacaatgggagaagaaggctgtctataccttctacttggagctcattcgg
gacttgcttcacttgtctatgtatttatgcttctttcttgtgattttcatgaactatggt
gtacctctgcacttaatacgggagctatatgaaacctttaggaatttcaaaattcgtgtt
gctgattacatgcgttataggaagatcgcttcaaatatgaatgacagattcccagatgca
acccctgaagagctagctgcaaacgatgcaacatgtattatatgccgcgaagagatgacc
acagcaaagaagttgatatgtggacatctttttcacgtgcactgtcttcgatcatggctg
gagagacagcatacctgccctacatgtagagctctcgttgtaccacctgaaaacggaaca
agttcatctggagggcaacatggaccttggtcagatgctcaaggacaagggtctggcacg
agctcagctcgacaaggttctggtggtgacatggctgctgataatttgacccagcatcag
gccaggcttcaggctgctgccactgcagcatcaatatatgagaaatcctacgtctatcca
tctgcaaacactctagtttggtctcctggatatgctgtacttcccaaggcttatgggcaa
ccagatgactccacgaagggcgaatctagtggggaaatgacatccaccggagaacaattt
gtcattcctggtggacaagtcaacttgtcctttccacggttcccacattgtacttttgtt
cctttccaattgcctcgtgttaatggaaacatgggagaggcatcgagtagtaatctgcac
attccagattctcagttggaagctcagaagaagatcattcagcagcagattgaggtatca
tttatgtgtcataaggtgctacaaaatcagctccaactcctgcagatgcagaagctgaaa
actgaagaaagtgcggacgctggtcccacagcctcgtcggacagaaaagggaagacaatt
tcttcttcttcttcaggagattga
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