Gossypium hirsutum (upland cotton): 107944495
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Entry
107944495 CDS
T04793
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107944495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107944495
03036 Chromosome and associated proteins [BR:
ghi03036
]
107944495
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107944495
Coactivators
SAGA/TFTC/STAGA complex
107944495
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107944495
STAGA complex
107944495
TFTC complex
107944495
SAGA complex
107944495
SLIK complex
107944495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
TFIID-31kDa
CBFD_NFYB_HMF
Histone
Motif
Other DBs
NCBI-GeneID:
107944495
NCBI-ProteinID:
XP_040948472
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All DBs
Position
D05:64534185..64537894
Genome browser
AA seq
526 aa
AA seq
DB search
MSNVPKEAIEVIAQSIGITNLSPDVALSLAPDVEYRVQEIMQEAIKCMRHSRRTVLTADD
VDSALNLRNVEPICGFASRDALRFKKAAGHKDLFYIDDKDVEFKEVLESPLPKAPLDTSV
TSHWLAIEGIQPAIPENASIEAPSDGKKAEYKEDGLSVDVKLPVKHVLSRELQLYFDKIV
DVTMNKSVSILFKQALLSLATDSGLHPLVPYFTYFIADEVARNLNNFPLMFALMRVARSL
LQNEHLHIEPYLHQLMPSIITCLVAKRLGNKFTDNHWELRNFAAKLVASICKRFGHVYHN
LQPRVTRTLLHAFLDPTKTFPQHYGAIQGLAALGPSVVRLLILPNLEAYLQLLEPEIKRH
EAWCVYGALLRAAGLCMYDRLKMFPSLLAPPTRPVWKSNNKVATNKRKASTDTLMQQQPP
AKKIATESAIGMMPINSMQTDLQGAVSGFSTTVGGSNIGVSSMSRPLSNDNMLGREVGGR
VSKTSTVLAQAWKEDTDPGNLLASLFELFGESMLSFTPKPELSFFL
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacgttccaaaagaagccattgaagtgatagcacagagcattggaattaccaat
ttgtccccagatgtcgccctttctttggctcctgatgttgaatatcgagttcaagaaatc
atgcaggaggcaattaaatgcatgcgccactcacggcggacggttttgacagctgatgac
gttgacagtgctcttaatctgagaaacgtggagccgatatgtggatttgcctctcgtgat
gcactacgattcaagaaagccgctgggcataaggatttgttctacattgatgacaaagat
gtggagtttaaagaagttcttgagtcacctttaccaaaagcaccacttgatacatctgtt
acatcccactggcttgcgattgaaggcattcaaccagcaattccagaaaatgcttcaatt
gaagcaccttctgatggtaaaaaggctgaatacaaagaagatgggctttctgttgatgtc
aaattacctgttaagcatgtattatctagagagcttcaactttactttgacaagatcgtg
gacgttaccatgaataaatcagtctcaattctctttaaacaagcattactgagtttggca
accgactcgggattacatcctttagttccttattttacatatttcattgcggatgaggtt
gcacggaatttgaataatttccctctcatgtttgctttgatgcgtgttgcccggagtctt
ctccagaatgaacacttacacatagaaccttacttacaccagttgatgccatctattatt
acctgcctcgttgcaaaaaggttaggaaataaattcaccgacaatcattgggaacttaga
aacttcgcagcaaagctagtggcatcaatatgcaaaagatttgggcatgtttatcacaat
cttcagccacgtgtgacaaggacactgctccacgcttttttggacccaacgaaaacattt
ccccagcattacggagcaattcaagggttagcagcccttggacccagtgtggttcgttta
cttatactaccaaatcttgaagcgtatttgcagcttcttgaacctgaaataaaaagacac
gaggcctggtgtgtttatggggccctgctgcgtgcagctggactgtgcatgtatgatcgg
cttaaaatgttccccagtttgctagcacccccaactcgtcccgtctggaaaagcaacaac
aaagttgcgacaaataaacgaaaagcaagcacggacaccttgatgcagcagcaaccacct
gcgaagaaaatagcaactgagagtgcaataggtatgatgccaataaattccatgcaaact
gatttacaaggggcagttagcggcttttctaccaccgtaggaggttccaatatcggtgta
tcatcaatgtcacggccgttatcaaacgataacatgctaggaagggaggttgggggtcga
gtttcaaagacatcaaccgttctagctcaggcttggaaggaagacacagacccggggaac
ttgttagcatcattatttgaactttttggtgaaagtatgttatcatttactcccaaacct
gagctttcattcttcctttga
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