Gossypium hirsutum (upland cotton): 107944555
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Entry
107944555 CDS
T04793
Name
(RefSeq) long chain base biosynthesis protein 2a isoform X1
KO
K00654
serine palmitoyltransferase [EC:
2.3.1.50
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00600
Sphingolipid metabolism
ghi01100
Metabolic pathways
Module
ghi_M00094
Ceramide biosynthesis
ghi_M00099
Sphingosine biosynthesis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
107944555
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ghi01007
]
107944555
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.50 serine C-palmitoyltransferase
107944555
Amino acid related enzymes [BR:
ghi01007
]
Aminotransferase (transaminase)
Class II
107944555
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
Aminotran_5
Motif
Other DBs
NCBI-GeneID:
107944555
NCBI-ProteinID:
XP_040963151
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Position
D12:54791642..54795490
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AA seq
496 aa
AA seq
DB search
MITIPYLTALTTYFSYGLLFAFGQFRDFFRNIFDWWHASNLEGYAPICLGLEDFYIRRLY
LRIQDCFGRPIASAPDAWFDVVERYSNDNNKTLKRTDKISRCLNLGSYNYLGFAAADEYC
TPRVIDSLCRFSASTCSTRVEGGTTTLHKELEECVANFVGKPAAVVFGMGYVTNSAILPV
IIGRGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEKVLREQIADGQPRTHRPWK
KIIVVVEGIYSMEGELCKLPEIIAICKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDTA
DVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAQQIISSIKVILG
EDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPIMPIMLYNPAKIPAFSRECLK
QNVAVVTVAFPATPLLLARARICISASHTKEDLLKALEVISQVGDMVGIKYFPAEPKKQQ
QDQQQQQPGKDTIKLD
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgatcacaattccgtatttgaccgctttaaccacgtatttcagctatggccttctcttc
gcgtttggccaattccgtgatttcttcaggaacatcttcgattggtggcacgccagcaat
cttgagggatatgcgccgatctgtttaggacttgaagatttctatattcggcgcttgtat
cttcgtattcaggattgtttcggaagaccgatagcaagtgctccagatgcttggtttgat
gtagtggagcgctactccaatgacaataataaaacattgaagcgaactgacaagataagt
aggtgtcttaacttgggatcatacaattatcttggcttcgcagcagccgatgaatattgc
acgccccgtgtaattgattcattatgtagattttcggcaagcacttgtagtacccgtgtt
gaaggaggaactacaacactgcataaagaactggaggaatgtgttgcgaattttgttggg
aagcctgctgctgtagtcttcggcatgggctatgtgacaaactctgctattcttcctgtc
ataattggaaggggaggattaattattagtgattcattaaaccacaactctattgtcaat
ggtgctcgaggctcaggagctactatccgagtttttcaacataatactccttctcatttg
gaaaaagttctgagagaacaaattgctgacggacagcccaggacacataggccatggaag
aagataattgttgtcgtggagggtatttatagtatggaaggcgaactttgtaagctccct
gagattattgccatatgcaagaagtacaaggcttatgtttatttggatgaggctcatagc
attggggctgtgggaaaaactggaagaggcgtatgtgaactcttaggagtggacactgct
gatgtggatatcatgatgggaacttttacaaaatcttttgggtcttgtggtggttatatt
gctggatccaaggaacttatacaatatcttaagtacacatgtcctgctcatctatatgca
acatcaatatcacctccagctgcacagcaaattatatcttcaataaaggttattcttgga
gaggatggttctagcagaggcgctcaaaaactcgcaaggatacgtgagaatagcaacttt
ttcaggtcagaactacaaaaaatgggttttgaggtccttggagacaatgattcccctata
atgcctataatgctttacaatccggcaaaaatccctgcattttctcgagagtgccttaaa
caaaatgttgctgttgttacagttgctttccctgccaccccactacttttagccagggca
cgtatttgcatttctgcctcgcacaccaaggaagaccttcttaaagcgctagaggttatt
agtcaggttggtgatatggtgggcataaaatacttccctgcagagcctaagaagcagcag
caggaccagcaacagcagcagcccgggaaagacacaatcaagttggactga
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