KEGG   Gossypium hirsutum (upland cotton): 107944611
Entry
107944611         CDS       T04793                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ghi03009]
    107944611
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    107944611
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd Beta-prop_EML EIF3I NBCH_WD40 Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_IP5PC_F WDR90_beta-prop_4th Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_SCAP Beta-prop_IFT122_1st WDR54 Beta-prop_LRRK2 Beta-prop_SPT8 Beta-prop_NWD2_C Nucleoporin_N Beta-prop_BBS7 PEP5_VPS11_N Beta-prop_DCAF12 Ge1_WD40
Other DBs
NCBI-GeneID: 107944611
NCBI-ProteinID: XP_016733908
UniProt: A0A1U8N7R4
LinkDB
Position
D06:complement(1841415..1844351)
AA seq 444 aa
MNVVIASSSIDGGIGCWDLQTGAEQLRYKTCASPPHGLTTVGCRFLACSQLRDPSATSGH
LLYWSWSKPQAQVKSFPAEPIKPLIANSDGTYIVGGGSSGDIYIWEVATGRLLKKWHAHY
RAITCLVFSEDDSLLISGSEDGCVRVWSLFMIFDDVRRQQVSHLYEYSFTEHTLRVTDIV
IGYGGGNAIIVSASEDRTCKVWSLSKGRLLRNVVFPSIIDAIAIDPGEHVFYAGSRDGKI
YIAALNAESSPSDNYGLHIIGSLTDQSKPVTCLAYSAEGNLLFSGSEDGMIRVWDVKTQN
ITRMFRHSKGPVNNIVIVRLPYPLGRAESKSQPSSRKHELSLPPPLEKYANSSDEDMDNK
AIVMLPDTIDLPSYLSSQLINDHIKQLQQQGSSAVAEMEAKRLKVDCQRSKEMFQQLRKV
YDNLQEFCVNELLDEQTMEGSKGN
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgaatgtagtgatagcatcatcttcaatcgacggcggcatcggttgctgggacctacag
acaggggcagagcaactccgttacaaaacttgcgcctcccctccacacggcctcaccacc
gtcggttgccgtttcctcgcctgctctcaacttcgtgacccctccgccacctccggtcac
ctcctttattggtcttggtccaagcctcaagcccaagttaaaagctttcccgctgaaccc
attaaaccgcttattgctaatagcgatggtacttacatagttggtggaggttcatcaggt
gatatttacatttgggaggttgctacgggtaggttattgaagaaatggcatgctcattat
agagcaattacatgtttagttttctctgaagatgattcacttctcatttccgggtccgaa
gatggatgcgttcgagtttggtcgcttttcatgatattcgatgatgttagacggcagcag
gttagtcatctttatgagtatagttttacggaacatactctgcgtgtaacagatattgtt
attggttatggcggagggaatgcgatcatcgtgtcggcttccgaggaccgaacttgtaag
gtatggagcttatccaagggaagattattacgaaacgttgtgtttccttccatcattgat
gcaattgcaatagaccctggtgaacatgtcttctatgctggcagccgagatggtaaaatt
tatatcgctgctcttaatgccgaaagttcccctagcgacaactatggattgcacatcatc
ggttcactaactgatcaaagtaagccagttacatgcttggcatatagtgctgaaggaaat
ttgctattttctggatcagaggatggcatgattcgagtttgggatgtgaaaacgcaaaac
attactcgcatgttccgacattccaaaggccctgtgaacaatatcgtcattgttagactc
ccatacccccttggtcgggcagaatcaaaatcacaaccttcctcaagaaagcatgaactt
tcactcccacctccgctagaaaaatacgcaaattcaagcgatgaagacatggacaacaag
gctattgttatgctcccagatactatcgacctcccttcatacctcagttctcagctaatc
aatgatcacattaaacaacttcagcaacaagggtcttcggctgtggccgaaatggaagcg
aagagactgaaggttgattgtcaaagatcaaaggagatgtttcaacaactgagaaaagtt
tatgataacttacaggaattttgtgtcaatgagctcttagatgaacaaacaatggaagga
tccaaagggaattaa

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