Gossypium hirsutum (upland cotton): 107944969
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Entry
107944969 CDS
T04793
Name
(RefSeq) WD repeat-containing protein 43
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107944969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107944969
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
107944969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp12
ANAPC4_WD40
Beta-prop_EML_2
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_ACSF4
EIF3I
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
107944969
NCBI-ProteinID:
XP_040969351
UniProt:
A0ABM3BQM0
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Position
A05:12130076..12135409
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AA seq
625 aa
AA seq
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MGKQKVKPLLTCFTQEGDYLAISSPDGTVKIWSTSTGSLLAEWKQSDGNLPNSYSCMACS
FIPKKHKKGSGTCLLAIGLNEGDIWIIDVLAGDKKWSSTGYYPSGIAGLSFRNKGHSLYV
IGSNGKASEMNSENGDLIREFKAAKRSITSLTFSQDGKYLALANGKLRVSNLENGKELLK
SPDDLDPVQYISISNDAKTIVTSGFGETNLQVWSCDLSSKTLSGGSVISMPRPPLAFECK
NSGSDEDGSVILALSESGIAYVWNLDSVSQDDVEPTKITVKLDKAEGDQQKSAGSRKSRI
PVISARLHATGMDQQLVALIAYGPLDSPQFSLVNVSKAGENIVINAVDQTETIQENGTSL
LKVDPNGKPNKKRAAPDPDLATTRSRNDTGHGENADGVLVNDDPSEPTMAEKLASLNLIE
NGKNETNENQERKEPSTHGKPPIADSVNVLLKQALRADDHALLLDCLYTQDEKVIANSVS
QLNPSDVLKLLQSLVSITQSRGAVLACALPWIKSLLLHHASGIMSQESSLLALNSLYQLI
ESRVSTFESALQISSCLDFLYAGIVEDEFVENAAIPVIFEDMDESDEEQPEDAMETDDQE
NEDGEALDEASDGVSDFEGIDDMSD
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggggaagcagaaagtgaaacccctccttacatgtttcactcaagaaggtgattatctc
gccatttcgtctccggatggaactgttaaaatttggagcacaagtactgggagtttattg
gcagagtggaagcagtcagatggcaaccttcctaatagttattcctgtatggcttgcagt
tttatcccaaagaagcataaaaaggggagtggaacttgcttacttgctattggattaaat
gaaggggacatctggattattgatgtcttagctggtgacaagaagtggtcatctactggt
tattatcctagtggaattgctggtctttcattcagaaataaaggtcatagtctgtatgtc
attggaagcaatggaaaggcatctgaaatgaactcagaaaatggagatttgataagggag
ttcaaagctgccaaaaggtccatcacttctttgacattttcacaagatggaaagtatttg
gctttggccaatggtaagcttcgggtctccaacctggaaaacgggaaagagcttctaaag
tctcctgatgatttggatcctgtgcaatatataagtatatccaatgatgccaagacaatt
gttacatcagggtttggggagacaaatcttcaagtctggagttgtgatttgagttccaaa
actctgagtggtggctctgttatttcaatgcctcgccctccgttagcttttgaatgtaag
aatagtggtagtgacgaagatggttctgtgatcttggcactttcggagtctggtattgct
tatgtttggaatttggactccgtttcccaggatgatgttgaaccaacgaagattactgtc
aaacttgataaagcagagggagaccagcagaagagtgcaggctcaaggaaaagtcgtatt
cctgttatctcagctagattacatgctacaggcatggaccaacagcttgttgcccttatt
gcttatggtccattagattctccacagtttagtcttgtgaatgttagcaaagcaggggag
aatattgttataaatgctgtggatcagactgaaactattcaagaaaatgggacatctttg
ttaaaagttgatccaaatggaaaaccaaataaaaaaagagctgctcctgatccagacctt
gctacgacaagaagcagaaatgatactggtcatggagagaatgctgatggagttctcgtc
aatgatgatccgagtgagcctaccatggctgagaaacttgcaagtttaaatttaatagaa
aatggaaaaaatgaaaccaatgaaaaccaagaaagaaaagaaccctctacccatggcaag
cctcccatcgcagattcagttaatgttctgcttaagcaggcactccgtgctgacgatcat
gcacttctgttagattgcttatacactcaagatgagaaggttattgcaaattcagtctct
caattaaatccatctgatgttctcaagcttttacaatctcttgtatctataactcaatca
aggggtgcagtattggcatgtgcgcttccttggataaaaagtttacttcttcatcacgct
agtggaattatgtcccaggaatcctctcttcttgctctgaactctttgtatcagcttatt
gaatctagagtctcaacttttgaatcagctcttcaaatatcaagttgcttagacttcctt
tatgcagggattgttgaggatgagtttgttgagaatgctgcaattccagtaatatttgag
gacatggatgaaagtgatgaagagcaaccggaagatgcaatggaaactgatgatcaagag
aacgaagatggggaagcacttgatgaagcatctgatggggttagtgattttgaagggatt
gatgatatgagtgactga
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