Gossypium hirsutum (upland cotton): 107945095
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Entry
107945095 CDS
T04793
Name
(RefSeq) RNA-binding protein Y14
KO
K12876
RNA-binding protein 8A
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107945095
09122 Translation
03013 Nucleocytoplasmic transport
107945095
03015 mRNA surveillance pathway
107945095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107945095
03041 Spliceosome [BR:
ghi03041
]
107945095
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107945095
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107945095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
107945095
NCBI-ProteinID:
XP_016734435
UniProt:
A0A1U8N642
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Position
D13:complement(63295883..63299305)
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AA seq
200 aa
AA seq
DB search
MAGADVEAVDFEPEDDDLMDEDAAAGDASPQASMPKLKSAITGGASVSLSGPKKTKGRGF
RQDDADRHSHLASRDFDSIGSDGGPGPQRSIEGWIILVTGVHEEAQEDDLHNTFGEFGEI
KNLHLNLDRRTGFVKGYALIEYEKFEEAKNAISAMDGAELLTQTMNVDWAFSNGPSVGAS
KRKNIRAGRTHRSRSPRRRY
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtgctgacgtggaggccgtggatttcgagccggaggacgacgacctcatggac
gaggacgccgccgccggtgacgcctcacctcaagcctccatgcctaagctcaagtctgcc
atcactggcggcgcttccgtttctctttctggccctaagaagactaaaggccgtggcttc
cgccaggacgacgccgatcgtcattcccatctcgcctcccgcgactttgactctatcggc
tctgacggtggccccggtccccagagatctattgaaggatggataattttggtcactggt
gtacatgaggaagcacaagaggatgatttgcacaatacatttggtgaatttggtgagatc
aagaatttgcatttaaatcttgatcgtcgcactggatttgtcaagggatatgcactgatt
gaatacgaaaagtttgaagaagcaaagaatgccatatctgcaatggatggagcagaactt
cttacgcagactatgaatgttgattgggcctttagcaatggacccagtgttggagcctct
aagagaaaaaatattagagctggacggacacatcgctcgcgaagtcctaggagaagatac
taa
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