Gossypium hirsutum (upland cotton): 107945145
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Entry
107945145 CDS
T04793
Name
(RefSeq) protein CHROMATIN REMODELING 5
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107945145
03036 Chromosome and associated proteins [BR:
ghi03036
]
107945145
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
107945145
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
107945145
SLIK complex
107945145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
107945145
NCBI-ProteinID:
XP_040965518
UniProt:
A0ABM3BEQ7
LinkDB
All DBs
Position
D13:complement(63238799..63251925)
Genome browser
AA seq
1773 aa
AA seq
DB search
MACFRNYSNDTVSHDALEGKSQGRNSGRILSSAENEDIDGTYSEREFDINMDAQYQSDGV
GISNSEQSRLHHEVATGNGAGISNSNFQPAGRRIAPGRWGSTFWKDCQPMDRQGGSDSGQ
ESKSDHKSLEGSVYNSSDDRDDRLESEVDEAQKEVGKSQRGHSDVPADEMLSDEYYEQDG
EEQSDTMHYSGFGNSVGLNTRAQSKHVSVSTNVSRSSKALNKRNYDNEDDNDDNNDDVDA
DYEEEEEEDEDDPDDVDFEPDYGLANSHAGNKDKDWDGEDSEEEDNSHGDLDVSDEDDSY
YKKKPKGRQQIKVGPNVKPTREHKSSNRQRRGRSSFEEDEYSAEDSDSESDGDFKSMARR
SGNNHKINARSNTLTSMGRNNEIRTSGRSVRKVSYVESEESEEIDEGKKKKTRKDEAEEE
DGDTIEKVLWHQPKGMAEDAIRNNRSTEPVLLSHFFDSEPDWSEMEFLIKWKGQSHLHCQ
WKSISELQNLSGFKKVLNYTKKVMEDVRYRKSLSREEIEVNDVSKEMDLDLIKQNSQVER
VIVDRIRKDAFGNVMSEYLVKWQGLSYAEATWEKDIDIPFAQDAIDEYKAREAAMAVQGK
MVDHQRKKGKASLRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKT
VQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQ
YEFYNDKKIGRPIKFSALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLS
EFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKNKDDFVQNYKNLSSFNEIELANLHM
ELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSL
LNIVVELKKCCNHPFLFESADHGYGGDTGMNDISKMERIILSSGKLVILDKLLMRLHETK
HRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLST
RAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILE
RAKKKMVLDHLVIQKLNAEGRLERKETKKGAYLTYNELSAILRFGAEELFKEDKNDEESK
KRLLSMDIDEILERAEKVEEKVSEEEGNELLSAFKVANFCSAEDDGSFWSRWIKPDAIAQ
AEDALAPRAARNTKSYAETSQPERSNKRKKKGSDLQEQQERVPKRRKSEYSAPSAPMIEG
ATAQVRGWSYGNLPKRDALRFSRAVMKFGNESQITLIAEEVGGAVAAAPLDAQIELFNAL
VEGCREAVEVGNIEPKGPLLDFFGVPVKANDLVNRVQELQLLAKRISRYEDPIKQFRVLM
YLKPSNWSKGCGWNQIDDARLLLGIYYHGFGNWEKIRLDERLGLTKKIAPAELQHHETFL
PRAPNLKERANALLEMELAAVGGKNAGVKAGRKPSKKEKQNPLNVSISRVRDKKGKPGST
KVSFKMGRDKTERPQKVEPLVKEEGEMSDNEEVYEQFKEVKWMEWCEDVMIDEIKTLRRL
QRLQTTSADLPKDKVLSKIRNYLQLLGRRIDQIVLEHEDEPYRQDRMTMRLWNYVSTFSN
LSGERLHQIYSKLKQEQDDDGVGPSHMNGSTPGHVDRDGDPNFFPPFSRSTDKQRGHKKN
ATAHQTSQPIHKGIDTAKFEAWKRWRAETVNHPQLQPPTQRPLNNGSTRVVDPNSLGILG
AGPSDKRLVNTERPFRMRQTGFPQRQGFPSGIK
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atggcatgttttagaaactattcaaatgacacagtctcacatgatgccttggaaggcaaa
agccagggacgaaacagtggtaggattctgagctcagcagagaatgaggacatagatggt
acttatagtgaaagagaatttgatattaacatggatgcacagtatcaaagtgatggggtt
ggcatttcaaattcagagcagagtaggctgcatcatgaggtggctactggtaatggtgct
ggcatttcaaattccaattttcagccagcaggaaggagaatagcacctgggagatggggt
tcaactttttggaaggactgccagcctatggatcgccagggtggatccgattctgggcag
gagtcaaaatctgaccataagagtttggaaggctcagtatataattcatcagatgacagg
gatgataggttagaatcagaagttgacgaggcacaaaaagaagttggcaagtctcaaagg
ggtcattctgatgtccctgcagatgagatgttatctgatgaatactatgaacaggatggg
gaagagcagagtgatacaatgcattacagtggctttggcaattctgtcgggttaaatact
agggcacagtcaaagcatgtttctgtcagtaccaatgtgtccaggagttcaaaagcattg
aataagcgtaactatgacaatgaagatgataatgacgacaacaatgatgatgtagatgca
gattatgaagaggaggaagaagaagatgaagatgaccctgatgatgtcgattttgagcct
gactatggtcttgccaattctcatgcagggaataaggataaagactgggatggtgaagat
tctgaggaagaagacaatagtcatggtgatttagatgtttcagatgaagatgattcttat
tataaaaagaaacctaaaggtaggcaacaaattaaagttggacctaatgtaaaacccact
agagaacataagtcctccaatcgacaaagaagagggagatcatcttttgaggaggatgaa
tactcagccgaggattctgatagtgaaagcgatggggatttcaagagtatggcaaggaga
agtggaaataatcataaaattaatgctcgttctaatacattgacaagcatgggaagaaac
aatgagattcgtacttctggtaggtctgttcggaaagtatcatatgttgagagtgaagaa
agtgaagaaattgatgaaggcaagaagaaaaagacacgaaaggatgaagctgaagaggaa
gatggtgacacaattgaaaaagtgttatggcatcaaccaaagggcatggctgaagatgct
attagaaacaatagatctacagagcctgttttattaagccacttctttgactctgaacca
gattggagcgaaatggaattcctgataaaatggaaaggccagtcacatcttcattgtcag
tggaaatctatttctgagctgcaaaatcttagtggttttaagaaggttctaaattacact
aaaaaggtgatggaggatgtgagatacaggaagtcactttcacgtgaggagattgaagtc
aatgatgtgagtaaggaaatggacttggatctaatcaagcaaaatagtcaggtggagaga
gtaattgttgatcgaatcaggaaagatgcctttgggaatgtgatgtcagagtatttagtc
aagtggcagggattgtcttatgcagaagctacctgggaaaaggatattgatattccattt
gctcaagatgctattgatgagtataaggctcgtgaagctgcaatggctgtgcaggggaaa
atggtagatcaccagcgtaagaagggaaaagcaagtttgcggaaacttgatgaacagcca
gaatggttaaggggaggaaagcttcgtgattatcagctggagggtttgaattttcttgtc
aacagttggagaaatgatactaatgtcatcttagctgatgagatgggtcttggtaaaact
gttcagtctgtatctatgcttggttttctacagaatgctcaacaaatacccggcccgttt
cttgtggtcgtaccattatccacactgtcaaactgggctaaagaatttagaaagtggctt
cctgatatgaacattattgtatatgttggtactcgtgccagccgagaggtatgtcagcaa
tatgaattttacaatgacaagaaaattggcagacctataaaatttagtgccctgctgact
acttatgaagtagttctgaaggataaagcagtactgtctaagataaaatggaactatttg
atggttgatgaagctcataggttgaagaatagcgaggcgcagttgtacacaactctttca
gaatttagcaccaagaacaagttgctaattactggaactccattacaaaacagtgttgag
gagctatgggctctgcttcatttccttgatcctgacaagttcaaaaataaggatgatttt
gttcaaaattacaagaatcttagttcgtttaatgaaattgagcttgctaatcttcacatg
gaattgaggcctcacattcttcgaagggttatcaaagatgtagagaagtctttgcctcca
aaaattgagcgtatccttagggttgagatgtccccacttcagaaacagtattataagtgg
attttggaacgcaacttccatgacttaaataaaggtgttcgtggcaatcaggtctcactt
ttaaatatagtagtcgagctgaagaaatgctgcaatcatcccttcctgtttgaaagtgct
gatcatggttatggtggggacactggcatgaacgatattagtaaaatggagagaattata
ttaagcagtgggaagcttgttatacttgacaagttgcttatgaggttgcatgaaacaaag
catcgtgttttaatcttttcccagatggttagaatgctggatatattagccgagtacatg
tcactcagaggattccaattccagaggcttgatggtagtacaaaggcggagttgcgacag
caggctatggatcatttcaatgcacctggaagtgatgatttttgcttccttctttctact
cgggctggtgggctcggtatcaacctggcaactgcagacactgtcataatatttgattct
gactggaacccccagaatgacttacaggcaatgagtagagctcacagaattgggcaacaa
gaagttgtcaacatttacagatttgtgacaagcaaaagtgttgaggaagacatcctggag
cgagctaagaagaagatggtgcttgaccatttggtgatccaaaagttaaatgcagagggt
agactggaaagaaaggaaacaaagaaaggggcttatttgacatataatgaattatcagca
attttgagatttggagctgaagaattgttcaaagaggataaaaatgatgaagaaagcaaa
aaaaggctgttaagtatggatatcgatgaaattcttgaaagagccgaaaaggttgaggag
aaagtcagtgaagaggaagggaatgaattattgagtgcttttaaggttgcaaatttttgt
agtgctgaagatgatgggtctttctggagtcgttggataaaaccagatgccattgcccaa
gcagaagatgctctagctcctcgtgctgcaagaaataccaagagttatgctgagacaagt
caacctgagagaagtaacaaaagaaagaagaagggatctgatcttcaagagcagcaggaa
agagttccaaagcgccgtaaatcagaatactctgccccctcggcaccaatgattgaggga
gcaactgctcaagtgagaggatggtcttatgggaatctgcctaagagagatgcattgcgt
ttttctcgagcagttatgaaattcgggaatgagagccaaatcactttgatagcagaggaa
gttggtggtgctgttgcagcagctccacttgatgcgcagattgagctcttcaatgcccta
gttgaaggatgcagggaagctgttgaagtaggaaatatagaacctaagggaccattatta
gatttctttggtgttcctgttaaggcaaatgatctggttaatcgtgtccaagaacttcag
ctcttagcaaaacgaataagtcgttacgaggatcccataaaacagttccgtgtgttgatg
taccttaaaccctctaattggtctaaagggtgtgggtggaatcagattgatgatgcaaga
ttgcttctgggaatatactaccatggatttggtaattgggaaaagataagattagatgaa
aggcttggcctcacaaagaagattgctcctgctgaacttcagcaccatgaaacctttctg
ccacgtgcacctaatttgaaggagcgtgctaatgcactcttggaaatggaacttgcagct
gttggtggtaagaatgctggtgtcaaagctggtcgtaaaccttcgaagaaggaaaagcag
aatcctctaaacgtatcgatatctcgtgtcagagacaagaaaggtaaaccgggttctact
aaggtcagttttaaaatgggtagggacaaaaccgagagacctcagaaagttgaaccttta
gttaaagaagaaggtgaaatgtctgacaacgaggaagtatatgagcagtttaaggaagtg
aagtggatggaatggtgtgaagatgttatgattgacgaaataaaaacccttcgtcggctc
caaagattgcagactactagtgcagatcttcccaaggataaggtactttcgaaaattcgg
aactatttgcagcttcttggaaggaggatagatcaaattgtcttagaacatgaagacgag
ccctatagacaagatcggatgaccatgcgtttatggaactatgtctctacattttcaaat
ctttctggtgagaggcttcatcagatttattcgaagcttaagcaggaacaggacgatgat
ggtgttggaccttcccatatgaatggttccacacctggccatgttgatagagacggtgat
cctaatttcttccctcctttttcacgttctaccgataagcaacgagggcataagaagaat
gcaacggcacatcaaacatcacaaccgattcataaaggcatcgataccgcaaagtttgaa
gcttggaaacgatggagagcagaaacggttaaccatcctcaacttcaacccccaactcaa
agacctctgaacaatggtagtactcgtgtagtagacccaaactcattggggattctcggg
gcaggaccatctgataaacgtcttgttaataccgaacggccatttcggatgcgtcaaact
ggatttccacaaaggcaaggttttccctcaggcatcaagtaa
DBGET
integrated database retrieval system
