Gossypium hirsutum (upland cotton): 107945204
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Entry
107945204 CDS
T04793
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107945204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107945204
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107945204
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107945204
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107945204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
107945204
NCBI-ProteinID:
XP_016734575
UniProt:
A0A1U8N6I4
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All DBs
Position
D12:complement(6798063..6803766)
Genome browser
AA seq
698 aa
AA seq
DB search
MDDAEGGLSFDFEGGLDAGPPAPTASMPVVNSDPSAANNTNNFTAPGGVQASINDPVANQ
GGGAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKH
TNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLSAYNYNNKFYQQRN
AGFPQQTEKSQIPQAQNNVNQGAAGKPSATESTNVQQLQQQQQQIQQPQQQVSQTQIQNV
PNGQSNQANRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAE
NVILVFSVNRTRHFQGCAKMTSKIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHK
TRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISLAAESKREEEKAK
GVNSDNAENPDIVPFEDNEEEEEEESEEEDESFGAAAQGRGRGRGIMWPPHMPLARGARP
MPGMRGFPPMMMGGDGFSYGPVTPDGFGMPDLFGAPRPFAPYGPRFSGDFTGPASGMMFP
GRPPQPGGMFPSGGIGMMMGPGRAPFMGGMGPTGANPARGGRPVGMPPMFPLPPAPASQN
SGRAIKRDQRTPTNDRSSAGSEQGRGQEMGGPGGGLEDETQYQQEGQKAHHEDQFAAGNS
FRNDDSESEDEAPRRSRHGEGKKKRRGLEGDVATASDH
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgcggagggaggtctcagcttcgatttcgagggcggtctcgatgccggtccc
cccgcccccactgcctccatgcctgttgtcaattccgatccttctgccgccaacaatacc
aacaattttaccgcccctggtggtgtccaggcttcgataaatgatcccgtcgcaaatcaa
ggtggtggagctggccgaaggagcttccgtcagaccgtgtgccggcattggctccgcagt
ctctgcatgaagggtgatgcctgtggtttccttcaccagtacgacaagtcccgcatgccc
gtctgccgtttttttcggctttttggtgagtgccgggagcaagattgtgtgtacaaacac
accaacgaggatatcaaagagtgtaacatgtacaagctaggtttttgtcctaatggtcct
gactgccgatataggcatgcaaagctcccaggacctcctcctcctgtggaagaagtcctg
cagaagattcagcagttaagtgcttacaattataacaacaaattttatcaacagcggaat
gctggcttcccccaacaaactgaaaaatctcagattccacaagcacaaaacaatgtaaac
caaggagcagctggaaaaccttcagcaactgaatctactaacgtacagcagctgcagcag
cagcaacaacaaattcaacaaccgcaacaacaggtcagccagacccagatacaaaatgtc
cccaatgggcagtctaaccaggcaaacagaactgctatacctttgcctcaaggaatatct
aggtattttattgttaaaagttgcaaccgtgaaaatctggaactatctgttcaacaagga
gtatgggcaactcaaagaagcaatgaggctaaactgaatgaagcttttgattctgctgaa
aatgtgattttggtcttctccgttaaccgtacacggcatttccagggttgtgccaaaatg
acatccaaaattggtggatctgttgctggaggcaactggaaatacgctcatggaactgca
cattatggacgtaatttctcggtaaaatggttaaagttatgtgagctgtctttccacaaa
actcggcatttgaggaacccctacaatgagaacttaccagtaaagataagtagagattgc
caggagttagagccttctgttggtgagcagttggcctccttgctttatcttgagccagat
agtgagcttatggcaatttcactggcagcagaatcaaaaagagaagaagagaaagcaaag
ggagtcaattcagataatgcagagaaccctgacattgttccatttgaggacaatgaagaa
gaggaagaggaagaaagtgaggaggaggatgaaagctttggtgctgcagctcagggcaga
ggaagaggcagaggaatcatgtggccccctcacatgccactagcccgtggtgccagaccc
atgcctggaatgcgaggttttccaccgatgatgatgggtggtgatggcttttcttacgga
ccagttacacctgatggttttgggatgccagatctttttggtgctcctcgtccttttgca
ccgtatggacccaggttttctggagattttacgggtcctgcatctggcatgatgtttcca
gggcgacctccacagcctgggggaatgtttccatctggtggaatcgggatgatgatgggt
ccagggcgtgcaccatttatggggggtatggggcccacaggtgctaatcctgctcgaggt
ggccggcctgttggcatgcctccgatgtttcccctacctccagcacctgcctctcagaac
tctggccgggctattaaaagagatcagaggacaccaaccaatgacagatctagtgcagga
tcagagcagggtagaggtcaggaaatgggtggtccagggggtgggttggaagatgagaca
cagtatcagcaagaaggacaaaaggctcaccatgaagatcagtttgctgcagggaacagc
ttcagaaatgatgacagtgaaagtgaggatgaggcacccaggaggtcaaggcatggggaa
gggaagaagaaacggagaggcttggaaggagatgttgccactgcttctgatcactag
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