Gossypium hirsutum (upland cotton): 107945315
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Entry
107945315 CDS
T04793
Name
(RefSeq) CCR4-NOT transcription complex subunit 9 isoform X3
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107945315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107945315
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107945315
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
107945315
NCBI-ProteinID:
XP_016734765
UniProt:
A0ABM3BEM6
A0A1U8N728
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All DBs
Position
A13:complement(109896217..109904628)
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AA seq
321 aa
AA seq
DB search
MQTGNLPQSLSMNSPFGGPSASNPTVAGAPANKDRKMATAEHLVLDLSNPDLRENALLEL
SKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS
HPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE
IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAE
QPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDVTFSSCLREDQTTRRWLQQLLHN
VGVNRVPTLQAGAGFDHMLVN
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacgggaaatctgccacaatctctctcgatgaattcgccttttggaggaccgagc
gcgtcgaatccaactgttgccggagctccggcgaataaggatcggaaaatggcaacggca
gagcatttagttctcgatctcagcaaccctgatctccgagaaaacgcacttctggaacta
tcgaagaagagagaattatttcaagatttggctccattgttgtggaattcttttggtact
attgctgcacttttacaggagatagtttcaatttatcctgttctctcacctccaaatctg
actccagctcaatcaaatcgagtttgtaatgctcttgctctgcttcagtgtgtagcttct
catccagacacaaggatgttattcctgaatgctcatatacccttgtatctgtatcctttc
cttaatacgaccagtaagtcaaggccgtttgagtatttgaggcttactagcttaggtgtc
attggtgccttggtgaaggttgatgatactgaagttatcagcttcctcctgtccactgag
ataatcccattatgtctgcgcacaatggagatgggcagtgaactgtcgaaaacagttgct
acttttatagttcagaagattctactagatgatgttggcttggactatatttgcaccact
gcagagcggttttttgcagttggtcgagttctgggtaatatggttgcagcacttgctgag
cagccctcttcgcgactactgaaacatattattcgatgttatcttcgtttgtcagataac
ccaagggcttgtgatgcattaagaagttgccttccggatatgctacgagatgtcaccttt
agcagttgtcttcgtgaggatcaaaccactaggagatggctgcagcagttgcttcacaat
gttggagtgaatcgagtgccaactcttcaggccggtgcaggattcgatcacatgctggtt
aactga
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