Gossypium hirsutum (upland cotton): 107945507
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Entry
107945507 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107945507
03041 Spliceosome [BR:
ghi03041
]
107945507
03036 Chromosome and associated proteins [BR:
ghi03036
]
107945507
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107945507
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107945507
mRNA cycle factors
Common to processing body (P body) and stress granule
107945507
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107945507
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107945507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107945507
NCBI-ProteinID:
XP_016735038
UniProt:
A0A1U8N7U4
LinkDB
All DBs
Position
A13:109675509..109681281
Genome browser
AA seq
603 aa
AA seq
DB search
MTTRTSWADMAANSAAENVGSGSSSASNSKPVYVPPHLRNRPPSADPPAPTSTGPASSND
RPGQGGSRWAAPRSDYGNRSGYGGGGGRLGGWGGRGGWDRGRDREVNPFGNDDADTEQAF
SEQENTAINFDAYEDIPVETSGDNVPPPVNTFAEIDLGDALNLNIRRCKYVKPTPVQRHA
IPIALAGRDLMACAQTGSGKTAAFCFPIISGIMRGQVPQKPLRGARTVFPLALILSPTRE
LSMQIHEEARKFSYQTGVKVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVS
LQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPREIQRLASDFL
ANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQRANGVQGKQALTLVFVETK
KGADSLEHWLCMNGFPATTIHGDRSQQEREQALRSFKTGATPILVATDVAARGLDIPHVA
HVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNTNMAKALADLMQEANQEVPAWL
TRYAARSFGARNRRPGGGGRFGGRDFRRDSSYNRGGSDYYSGGNNNSGGYGGGYGANVAS
AWD
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgactacacgaacatcatgggcagatatggctgcaaattctgcagctgagaatgtcggt
tctgggtcttcttctgctagcaatagcaaacccgtttatgttcctccacatctccgtaat
cgtccaccttctgctgacccacctgctcccacttccactggtcctgcttcaagtaatgac
cgacctggacaaggtggatctcgttgggctgctcccaggagtgattatggcaaccggtca
ggatatggtggtggtggtggtcgacttggtgggtggggtggcagaggtggttgggatcgt
gggagggatagggaagttaatccatttggaaatgatgatgcagatacagagcaggcgttt
agtgagcaagagaatactgcaattaactttgatgcctatgaagacattcccgtggagaca
agtggggacaatgtgcctccacctgtcaatacgtttgcagagattgacttgggtgatgct
ctgaatctaaacatccgaaggtgcaagtatgtgaagccgacgcctgttcagcggcatgcc
atccccattgcccttgccggacgggatttgatggcatgtgctcagactggctctggaaag
acagctgccttctgttttcctattatcagtggaattatgagaggccaggttccacaaaaa
ccattacgtggagcacgtacagttttcccattagctcttattctctctcctaccagggag
ctgtcaatgcaaatacatgaggaagccaggaagttctcttaccaaacaggtgttaaggtg
gttgttgcttatggtggtgctcctattaatcaacaattgagggatctggagagaggtgtt
gatattcttgtggcaactcctggaagattggtagatttgctagagagggctagagtttct
ctacagatgatcaggtacttggcccttgatgaggcagacagaatgctagacatgggtttt
gagcctcaaataagaaagattgtggaacaaatggatatgcctccaccaggtgttagacaa
acaatgctattcagtgccacctttccaagagagatacagagactggcctctgattttctt
gcaaactatattttcttggctgtggggcgagttggatcaagtactgatttgattgtccag
agagtagaatttgttcacgagtcagacaaaagaagtcaccttatggaccttcttcatgct
cagagagcaaatggtgtccagggcaagcaagctcttacattagtttttgttgagacaaaa
aagggagctgattcacttgaacattggctgtgcatgaatggttttcctgcaactaccatt
catggtgatagaagccagcaggaaagggaacaagcattacggtcatttaaaaccggtgct
accccaattctagtagcaactgatgtggcagctcgtggtcttgatattcctcacgttgca
cacgtggtgaacttcgaccttcctaatgatatcgatgactatgttcatcgaattggacgt
acagggcgtgcaggcaaaactggtttagccacagccttcttcaatgagaacaatactaat
atggcaaaggcattagcagatctaatgcaagaagcgaatcaagaggtacctgcttggctc
actcgatatgcagctcgttcattcggagcgaggaatcgtcgtcctggaggaggaggccga
ttcggtggacgtgactttcgaagggattcatcttacaacagaggtggttcagattactat
agtggaggcaacaacaattcaggtggatacggtggaggctacggcgcaaacgttgccagt
gcatgggattga
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