Gossypium hirsutum (upland cotton): 107945757
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Entry
107945757 CDS
T04793
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107945757
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107945757
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
EMC7_beta-sandw
CarboxypepD_reg
CarbopepD_reg_2
RhgB_N
Motif
Other DBs
NCBI-GeneID:
107945757
NCBI-ProteinID:
XP_016735361
UniProt:
A0A1U8N8D3
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Position
D12:complement(24631621..24636195)
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AA seq
679 aa
AA seq
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MMEKVVVLNQTHSRHPLLWLIIVFQFSLLFFSAFSAEITARKILKDKSKKSPKVCLEKTD
EKVIINNGLVEVTIEKSTGHLLGIKYKGIDNVLETENDNDNRGYWDIVWDHEMYDKLATR
HVIIITQSDELVELSFTRVWNKTKDHGISAPVSVDKRYIVRRGVPGVYMYGIFKRRKYFP
HTYIHQLRIVFKLKEDKFHFMALSDTQQRIMPRREDREHSHCQVLAYPEAVLLTNPINPK
LKGEVDDKYQYSIESKDNKLHGWIADHDAVGFWIITPSDEFRTGGPHKQDLTSHVGPTAL
SMFVSNHYTGKDIAEFYKERVAWKKAFGPVLIYLNSATFDHAHRYRKSLWKDAKKRLSKE
IKSWPYSFAASKDYPHADHRGEISGQLLVRDKYLHKQLMKAKSAFVGLAAPGRAGSWQTE
GKGYQFWTQTDKAGRFSIKNVRRGKYNLYAWVHGFIGNYKLDRNVSVHTGYKKNLGTLIY
DPPRSGPTLWEIGIPDRTAAEFFIPDPNPTFVNSILNHDDEKFRQYGLWDRYSDTYPHHD
LVFKVGASNYSRDWFFAHVPRRTGNDTKATTWKIKFKLQEVNKSGKYTLQMALAAANFAE
VQVRINKPDGSPHFTTNRIGYDNAVARHGIHGLYRLYSINVPGKRLRVGNNTIFLTQTRC
KDEFMAVMYDYIRLEGPAV
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaaggtggtggtgctaaaccagactcactccagacaccctcttttatggcta
attatcgtctttcagttttcattgctatttttctcggctttctctgctgaaatcacagcc
agaaaaatcctcaaagataaaagcaagaagtctcccaaagtctgtttggaaaaaacagat
gagaaagttattattaataatggacttgttgaagtcactattgagaaatctactggtcat
ttgctaggaattaagtataagggaatagataatgtgcttgaaaccgaaaacgacaacgat
aatagagggtactgggatattgtgtgggatcatgaaatgtatgacaaattagctacacga
catgtcattatcattacacaaagtgatgagttagttgagctttccttcactagagtgtgg
aacaaaacaaaagaccatggcatctcagctcctgtaagcgtagacaaaaggtatatagta
cgacgaggagttccaggggtgtatatgtatggtattttcaagcgacgaaaatattttccc
catacttatattcatcaattaaggattgttttcaaactcaaggaagacaagtttcatttc
atggcgttatcagacacgcaacaaaggatcatgcctagacgagaagatcgagaacatagc
cactgtcaggttcttgcttacccagaagctgttctattgactaatccaatcaatccgaaa
cttaaaggagaggttgacgataagtaccagtattcgattgagagcaaagataacaagctt
cacgggtggatagcggatcacgacgctgtcggcttttggataatcacccccagcgatgag
ttccgaactggtggcccgcacaagcaggacctcacttctcatgttggtcctactgctctc
tccatgtttgttagtaatcattacacggggaaggacattgccgagttctacaaggaacga
gtggcttggaaaaaggctttcggccctgttttgatctatctcaactctgcaacttttgat
catgctcatcgttaccgcaagtcactgtggaaggacgctaaaaagcggttgagtaaagaa
atcaaaagctggccttacagtttcgctgcttcaaaggattatcctcatgctgatcatcga
ggagaaattagtggtcaattactagtgcgagacaaatatttgcacaagcaattaatgaag
gccaaatctgccttcgtggggttggcagcgcctggacgtgcaggatcatggcaaactgaa
ggaaagggatatcaattctggactcaaaccgataaggctggtcgtttcagtataaaaaat
gtccgacgagggaaatataacttgtatgcatgggtccatggtttcatcgggaactataaa
ttagaccgcaacgtcagtgtccatacaggatataagaaaaacttgggtacacttatatat
gaccctccaagaagtggtcctacattgtgggaaatcgggattcccgacagaacagctgcc
gagttcttcatacctgatccaaatccaacatttgttaactcaatcctcaaccatgacgat
gaaaaatttagacaatacggattatgggatcggtactcagatacttatcctcaccatgat
cttgtcttcaaagttggggctagcaattattccagggattggttctttgctcatgttccc
aggcgcacaggaaacgataccaaggcaaccacatggaagattaaattcaaactccaggaa
gtgaacaagtctggaaaatacactctccaaatggccttggcagccgctaactttgctgag
gttcaggttcgaatcaacaaaccagacggtagtccccattttacgacgaacagaatcggg
tacgataatgcagtagcaagacatggaattcatggattgtacagattgtatagcataaat
gtgcctgggaaacgattacgggtagggaacaacacgatttttctaactcagacaagatgc
aaagatgaattcatggcagttatgtatgactatattcgattagaaggacctgcagtttaa
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