Gossypium hirsutum (upland cotton): 107945880
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Entry
107945880 CDS
T04793
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
107945880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107945880
Membrane trafficking [BR:
ghi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
107945880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Clathrin
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
Beta-prop_WDR5
zf_RING_Vps8
Beta-prop_EML
WD40_Gbeta
WD40
ANAPC4_WD40
WD40_CDC20-Fz
WDR55
Beta-prop_WDR3_1st
Beta-prop_EML_2
zf-RING_Vps41
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
107945880
NCBI-ProteinID:
XP_016735521
UniProt:
A0A1U8N8T1
LinkDB
All DBs
Position
D12:42093359..42103990
Genome browser
AA seq
1932 aa
AA seq
DB search
MEADLDTLLDSHFSDSDDDSNSIVPHRTIDEILNDSDASTSSSSPSSPLSSHHRSDNRLA
RSNTVPQEFVELLEERDALSEGPAESSKTSPFKRIGDPVWRVSSSSSSKQLPTLFGGVKS
NAKPGAALAAAAAASRSVPTPHAAAIKSRRAVSGGVLQRVVGSDDQDVSSLNGESIGVSS
KSSVSGEKLEIDDYASDNKMGDFQSADAHQNSEANESKDKESEAERVIERIDGSSKLDFD
DSLNKEVTVLGSGEVLDNEIDPVSVSENSLVLDANDSYEKSVLSLPSVDQERNISKDLER
VGLERENVASDMPSYEDGEENASGGDDKSSMSDISELVEERLEQLESEMMSKRVESNARA
TMKPLELAEELEKKQASTGLHWEEGAAAQPMRLEGVRRGSTTLGYFDVDASNVITRTLSS
QAFRRDHGSPQVLAVHLNFIAVGMTKGVIILVPSKYSTHHADSMDPKMVILGLQGDRSLA
PVTSMCFNQPGDLLLAGYGDGHVTVWDVQRASATKVIAGEHNAPVIHTLFLGQDSQVTRQ
FKAVTGDSKGLVLLHAFSVVPLLNRFSIKTQCLLDGQKTGTVLSASPLLFDGSCGSTSVT
SQGNVTSTSSIGSKVGGVVGGDAGWKLFAEGSSMAEEGVVIFVTYQTALVVRLTPTLEVY
AQLSRPDGVREGSMPYTAWTCMAQPCGSSSENSPTETAERTSLLAVAWDRKVQVAKLVKS
DLKVYGKWSLDSSAIGLAWLDDQMMVVLTMTGKLNLFARDGTLIHQTSFAVDGLGGDDLI
TYHTHFVNIFGNPEKAYHNCVSVRGASVYILGPMHLTVCRLLPWKERIQVLRKAGDWMGA
LNMAMTLYDGQAHGVIDLPRNLDAVQETIMPYLVELLLSYVDEVFSYISVALGNQIGKVE
QPDDRESRNGSVHSEIKEQFTRVGGVAVEFCVHIRRTDILFDEIFSKFVAVQQRDTFLEL
LEPYILKDMLGCLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVILCREHGL
YGALVYLFNKGLDDFRAPLEELLVVLRNSQGEIASGLGYRMLVYLKYCFTGLAFPPGQGT
LPPSRLLSLRTELLQFLLEVSDCQDKKLASTSAFEGAYLNLYYLLELDTEATLDVLKCAF
IEEKSPEPDSSFSESGDANEEAKKEKDLMAESETMLVQKTIGALVHVLGKNTLQTDGLAS
YDDSEFIEAWPIKKDMGYLFEFIACYVACGRAKIPKTVLNQILEYLTSVNDSSQSVSTMS
TERSKRREKQLLALLEVVPETEWDQSYVLQLCENACFYQVCALIHTIRHQYLAALDSYMK
DVKEPIHAFAFINNMLMQLSNGDFTIFRSAVISRIPELVYLSRELTLFLIVDHFKEESSH
ILSELNSHPKSLFLYLKTVIEVHLSGTFNFSCLREEEIIDVLSEKRGKESEKVLKAYLEN
LSNFPKYLRHNPLHVTDDMIELYLELLCQFERDSVLKFLETFDSYRVEHCLRLCQEHGII
DAAAFLLERVGDVGSALLLTLSSLNDKFTELDTAIGSVVSKVSLSRSGSMEYFNSVLKMK
EVNDIRNLLQACIELCQRNTPRLNPEESEMLWFRLLDSFCEPLMGSYCNDRVSEKENHAG
LVGSLGSQDEEECMIKWRIPKSHKGGHILRKLFSQFIKEIVEGMIGYVHLPTIMSKLLSD
NVGQEFGDFKLTILGMLGTYGFERRILDTAKSLIEDDTFYTMSLLKKGASHGYAPRSLLC
CICNSLLTKTSSSFRVRVFSCGHATHIQCELLENESSTRGLSSGCPVCLPKKNTHRSRSK
SALTENGLVSSLPSRSQPAQGSTLHPHENDALDNSYGLQQISRFEILSNLQKDQRLAQIE
NLPQLRLAPPAIYHEKVKKGSGVLAAGESSSQVGGIQKPNRNKQLKDLKLKGSSLRFPLK
SSIFGKEKTSKP
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgacctcgacacgttacttgactcacacttctccgattccgacgacgattcc
aattcaatcgttcctcaccgtaccatcgatgaaatcctcaacgattccgatgcatccacg
tcatcttcttcgccttcatcccctctctcttctcatcaccgttccgataaccgccttgcc
cggtcgaataccgttccgcaagaattcgtggaattgctagaggaaagagatgctctttca
gaaggaccggcggaatcgtcgaagactagtccgttcaagcggattggtgatccggtttgg
agggtttcgtcatcatcttcttcgaaacagcttccgacgctgtttggtggagtgaaatcc
aatgcgaaaccaggggctgcgctcgcggctgcggctgcggcgtcgaggtcggttccgact
ccacatgcggctgctatcaagtcgaggagggcggtaagtggtggggttcttcagagggtt
gtaggtagtgatgatcaggatgttagctcattgaatggggaatcgattggggttagctcg
aaatcaagcgtttcaggtgaaaaattagaaattgatgattatgctagtgataataaaatg
ggcgattttcaatctgctgatgcccatcaaaatagtgaggctaatgagagtaaagataag
gaaagtgaagctgagagagtaattgaacgaattgacggctcttctaagcttgattttgat
gacagcttgaataaagaagttacagttttgggttcgggtgaagttttagataatgaaatt
gaccctgtttctgtgtctgagaattctctggttcttgatgccaatgattcatatgaaaag
agtgttttgtctttgcctagcgttgatcaggagagaaatataagtaaggacttggagagg
gtgggtttggaaagagagaacgtagcaagtgatatgcccagttacgaagatggtgaggaa
aatgctagtggtggtgatgataaaagttcaatgagtgatatttcagagcttgtagaggag
agactggagcaactagagagtgagatgatgagtaaaagggtggaaagcaatgcacgtgct
acaatgaagccgcttgaattggctgaggagcttgagaagaaacaggcttctactggtttg
cattgggaggagggtgcagctgctcaacccatgaggcttgaaggtgttaggaggggttca
accacgttgggatactttgatgttgatgctagcaatgtaatcactcggactctttcatca
caggcattcaggcgtgatcatggctcccctcaagttttggcagttcatctgaacttcatt
gccgtgggaatgactaaaggagtcatcatcttagtccccagtaaatattccactcatcat
gccgacagcatggatcctaagatggtgatacttggtttgcaaggggatcggtcccttgcc
cctgtaacatccatgtgcttcaatcagccaggagaccttctcttagctggctatggtgat
ggccatgtcacagtttgggatgttcagagggcatcagcaacaaaagttattgctggagaa
cataatgcaccagtgatacatacattatttctggggcaggattctcaagttactcgccag
tttaaagctgttacaggtgatagtaaaggcttggtgctgttacatgctttctcagttgtt
cccttgcttaataggttctcaatcaaaacacagtgtcttcttgatggacaaaaaacgggc
accgtattgtcagcttccccacttctttttgacggttcatgtgggagcacttcagtgacc
tctcaagggaatgttacttctactagcagtattggtagcaaggtgggaggcgtagttggg
ggagatgcaggttggaaactcttcgctgaaggctcgtctatggctgaagaaggtgtggtc
atatttgtcacctatcaaactgctctggtggtaaggcttactccaacattagaagtctat
gcgcaactttctaggccggatggtgtgcgggagggttccatgccatacactgcatggaca
tgtatggcgcagccttgtggatcttcatcagaaaattcaccgacagaaacagcagagaga
acttcgcttcttgcagttgcatgggatcggaaagttcaggttgcaaaattggttaaatca
gacctaaaagtatatgggaaatggtcccttgacagttcagccattggtttggcttggttg
gatgatcagatgatggtggttcttacaatgacaggaaaactcaacttgtttgctagggat
ggaaccctgattcaccaaacaagttttgctgtagatggcttgggaggagatgatctcatt
acgtatcatactcactttgttaatatctttggaaaccctgaaaaagcttatcataattgt
gtatctgtaagaggagcatctgtatatatactaggacctatgcatcttactgtctgccgt
ctccttccatggaaggaacgaattcaggttctacggaaagccggtgactggatgggagct
ttgaacatggcaatgacactttatgatggtcaagcccatggtgttattgaccttcctaga
aacctggatgcagtgcaggagaccataatgccctatcttgtagagttgcttttgtcgtat
gtggatgaagtgttttcctatatttctgtggcattaggtaaccaaattggtaaggtggag
cagccagatgaccgggaaagtagaaatggttccgtgcactcagaaataaaagagcaattc
acccgtgttggtggtgttgctgttgaattttgtgtccatatcaggaggactgacattctt
tttgatgaaattttctccaaattcgtggctgttcagcaaagagatacatttttagagctt
ctggagccatacatattgaaggacatgcttggatgtttgcctcctgagataatgcaagcg
ctggtagaacattacagcagcaaaggatggttgcagcgagttgaacagtgtgttctccat
atggatatttcgtccttggacttcaatcaggttgtcattttatgtcgggagcatggttta
tatggtgctctggtgtatcttttcaacaaaggattagatgatttcagggcacctttagag
gagctgttagtagttttacgaaatagtcaaggagaaattgcttctggccttgggtacagg
atgcttgtttacttgaagtactgctttacaggtcttgcttttccaccaggccaagggact
cttccaccatcacgcttgttgtctcttaggactgaacttctgcagtttttgttagaggtt
tctgattgtcaggataaaaaattagcttcaacttcggcttttgaaggggcataccttaac
ctgtattatctcttagagttggatactgaggccactttagatgttctcaaatgtgctttc
atagaagagaaatcccctgaaccggactcctctttttctgaatctggcgatgcaaatgag
gaagctaaaaaggagaaagatttgatggctgaatctgaaacaatgttggttcagaaaacc
attggtgctctggttcatgttcttggtaagaatacccttcaaacagacgggcttgcaagc
tatgatgactctgaatttatcgaagcatggcctataaaaaaggacatgggatatctgttt
gagtttatcgcatgctatgttgcatgtggaagagctaaaatcccaaaaactgttctaaat
cagattttggaatacttgacttcagtaaatgacagttcacaaagtgtttctaccatgagt
actgaaagatccaaaagaagagagaagcaattactggcacttttggaggtagtgccagaa
actgaatgggaccaatcctatgtgctacagttatgtgagaatgcatgcttttaccaggtt
tgcgccttaattcataccatcagacatcagtatcttgctgctctcgacagctatatgaaa
gatgtgaaagagccaattcatgccttcgcatttatcaacaacatgttaatgcagttgagc
aatggagattttactattttcagatcagcagtcatctctcgaattccagagctggtttat
ttaagcagagagttgacattattcttaattgttgaccattttaaagaagaaagttctcat
atcctatctgaacttaactctcatccaaaaagccttttcctttacttaaagacggtcatt
gaggttcacttatcaggcaccttcaacttctcttgtttaagagaagaagagattatagat
gtcttgagtgaaaaaagggggaaagaatcagaaaaagtccttaaagcctacttggaaaat
ttgtctaatttccccaagtatctgcgacataatcctcttcatgtaactgatgatatgatt
gagctttatctggagttattatgtcagtttgaacgggattcagttctcaagttcttggaa
acttttgatagctatcgagttgaacactgtctccgcctgtgccaggaacatggaatcata
gatgcagctgcatttttattagaaagggttggtgatgttggtagtgctcttttgcttaca
ctttctagccttaatgataaatttacagagcttgatactgccatcggaagtgtggtctct
aaggtatctttgagtagatctggtagcatggagtatttcaactctgttttgaaaatgaag
gaggtgaatgacatacgcaatttattgcaagcctgtattgaattatgccaacggaatacc
cctcgtttgaatccagaagagtctgagatgctttggtttagattacttgactcattttgt
gaacctttgatgggttcgtactgcaatgatagggtatctgaaaaggaaaatcatgcggga
ctggttgggtcattgggctctcaagatgaagaagaatgcatgatcaagtggaggatacct
aaatctcacaaaggtggtcatatattgaggaaattgttctctcaattcatcaaagagatt
gttgagggaatgataggatatgttcatcttccaactattatgtcaaaactactatctgat
aatgtcggccaggaatttggagattttaagcttaccatattgggaatgctcggaacttat
ggctttgaaagaagaattctggatactgcaaaatctttgattgaggatgacacattttac
acaatgagcttactgaagaagggagcttctcatggatatgcacctcgaagtttattatgt
tgtatatgcaacagccttcttaccaagacctcttctagctttcgtgttcgggttttcagt
tgtggtcacgcaactcatattcaatgtgagcttctggaaaacgagtcatcaactagaggc
ttgtcatctggatgccctgtttgtttgcccaagaaaaacactcacagatctagaagtaaa
tccgctcttacagagaatggtttagttagttcgttgccctcaagatcccaaccagcacaa
ggatcaacattacaccctcacgaaaatgacgcactagataactcttacggccttcaacaa
atatcgcggtttgaaattttaagtaaccttcaaaaagaccagagattagcccagatagaa
aatttaccacagttgaggcttgcaccgccggcgatttatcacgaaaaagtgaagaaagga
agtggagtattagcagcaggggaaagcagcagtcaagtgggtggaatccaaaaaccaaac
agaaacaagcaactcaaggatctaaaattaaagggatcatctctcagattcccactaaaa
tcaagtatttttggcaaggagaaaacaagcaaaccatag
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