Gossypium hirsutum (upland cotton): 107945938
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Entry
107945938 CDS
T04793
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL-like isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
107945938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107945938
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
107945938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
A_deaminase
Motif
Other DBs
NCBI-GeneID:
107945938
NCBI-ProteinID:
XP_040962712
LinkDB
All DBs
Position
D12:complement(42264480..42272870)
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AA seq
766 aa
AA seq
DB search
MDTYSSGEELVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
IRSHAQKFFSKLEKEALAKGVPIGQALDIEIPPPRPKRKPNNPYPRKTGAATTVQDGAKD
GKSETPISSSRCKQVLDLEKEPLPERPNGDEKATNLKENQDESCSGVFTLLHEANCSSAS
SMNKNFIPASAALKSSCTFREFVPSPKEVVNHDKHVFYVSLELKEIYKAYILNVQQKIHD
NGTSTASNLEYSCTSYDKPAQVQRKDDLDGALCADEMQAAQNFPRHVSVHVLDGSLRTCA
QNPSLDMSFQDSVFHPMGDVHGPNLSANLAASAATEHQNNAPRSTQQALPPFHTPFMHLR
PNQQDYRSFLHVSSTFSSLIVSTLLQNPAAHAAASFAARFWPYANIESSGDSPACGLGGF
PSRQFNSAPSMAAIAAATVAAATAWWAAHGLFPVCAPLHTGFTCFPASTAAVPPMENGQP
PAAKTEQKGKTDQALSLQVEQLDPENSEALQGQHSSSKSPTSSSSDCEERGDAKVNTGVK
ATDDEMAAEVIEPQDANKTKNKKQVDRSSCGSNTPSSSEVETDALEKHEKDKEDSKGADP
NHPQVECSRRSSRSNSNLSDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDGKSKGQQKE
NIGEDKQNPAEEDEEISTLDLNSKTLGSCSDHQETVKNALSRDKNTTEEGLLTIGLGHSK
LKAGRTGFKPYKRCSVEAKENRVMNTGSQGEEKGPKRVRLEGEAST
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggacacatactcttctggggaagaactcgttattaagactaggaagccttatactatt
accaaacaacgtgaaagatggactgaggaggagcataataggttcctagaggctttgaag
ctctatggacgagcttggcaacgcattgaagaacacataggaacaaagactgctgtgcag
atcaggagtcatgctcaaaaattcttttcaaagttggagaaggaggcacttgctaaaggt
gtaccaataggtcaagctcttgacatagagattccaccaccacgccctaaaagaaaacca
aacaatccttatcctcgaaaaaccggtgctgctaccacagtacaggatggagctaaggat
ggaaaatctgaaacaccgatatcttcttcacgttgcaagcaagtgttggacttggagaaa
gaaccacttccagagagacctaatggagatgaaaaggctacaaatctgaaagaaaatcaa
gacgagagttgctctggggtttttacccttctccacgaagcaaattgctcctctgcttct
tccatgaataagaattttataccagcgtcagcagcactcaaaagctcttgcacatttagg
gagtttgtaccttctccaaaagaggtagtaaatcatgacaaacatgtattctatgtctct
cttgaacttaaagaaatttataaagcttatatacttaatgtccaacagaaaattcatgat
aatggtacaagtacggcctcaaacctggagtattcttgcacttcatatgataaaccagct
caagtccagagaaaagatgatttggatggtgctttatgtgcagatgaaatgcaagccgct
caaaattttcctcgacatgtttctgtgcatgtcctagatggaagcctgagaacatgtgct
caaaatccttccctggatatgtcatttcaggattctgtatttcaccctatgggcgatgtt
catggacctaacctgtctgcaaatctagctgcatctgcagctactgaacatcagaataat
gctccgagatcaactcagcaggcactgccaccttttcacactccctttatgcatcttcgc
ccaaatcaacaggactatcgatcatttctacatgtctcctccactttttccagtctcatt
gtatctactttgttacagaatccagctgcccatgcagcagcaagctttgcagcaagattt
tggccttatgcgaatattgaaagctcaggcgattctcctgcatgcggcttaggaggtttc
ccatctagacaattcaactctgctccaagtatggctgcaattgctgctgcaactgtagca
gctgcaactgcatggtgggccgcccatggactgtttcctgtatgtgctcctctgcataca
ggctttacctgttttcctgcatccactgctgcagttccaccaatggagaatggtcaacct
ccagctgccaagacagaacaaaagggtaaaactgatcaagctctatctctgcaggttgag
caactagaccccgaaaactctgaagctttgcaaggtcagcattcatcatctaaatcacct
acttcatcatcgtcggactgtgaagagagaggagatgcaaaagtgaatactggagtgaaa
gctaccgatgatgagatggctgctgaagtaattgagcctcaggatgcaaataaaacaaag
aacaaaaaacaagttgaccggtcctcatgtggctccaacactccttcaagcagtgaggta
gagacagatgcgttagaaaaacatgaaaaagacaaggaagattcaaaaggagctgaccca
aatcatccacaagttgaatgtagccgtcgtagtagtagaagcaatagcaacctgagtgat
tcttggaaggaggtatctgaagaggggcggctagcttttcaagccctcttctcccgagag
gtactcccgcaaagcttttctcctccacatgatggcaagagcaaggggcagcaaaaggaa
aatataggtgaagacaagcaaaatccagctgaggaagatgaagaaatatcaactttagat
ctcaacagcaagacattgggttcttgttctgatcatcaagaaactgtgaaaaatgcatta
tcaagagacaagaacactacagaagagggcctgctgactattggattaggacattcaaaa
ctaaaagctggccgaactggatttaaaccttacaaaaggtgttctgtggaagccaaagaa
aacagagtgatgaacaccggcagtcaaggtgaagagaaaggtcccaagagggtacgcttg
gaaggggaagcttcaacttga
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