Gossypium hirsutum (upland cotton): 107946014
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Entry
107946014 CDS
T04793
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107946014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107946014
03009 Ribosome biogenesis [BR:
ghi03009
]
107946014
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107946014
Spliceosome [BR:
ghi03041
]
Complex A
U2 snRNP components
U2 related factors
107946014
Complex B
107946014
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
107946014
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Helicases
107946014
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
ABC_tran
SRP54
Cas3-like_C_2
T2SSE
FtsK_SpoIIIE
AAA_7
AAA_SelU
AAA_30
Flavi_DEAD
nSTAND_NTPase5
TsaE
NACHT
Motif
Other DBs
NCBI-GeneID:
107946014
NCBI-ProteinID:
XP_040962751
UniProt:
A0ABM3B6R7
LinkDB
All DBs
Position
D12:complement(43394162..43397762)
Genome browser
AA seq
725 aa
AA seq
DB search
MGTERKRKVSLFDVVDEPSAKIAKSNGLGLTGMNANSSINKWNGRPYSQRYYDILEKRKT
LPVWQQKEEFLQVLRANQTLVLVGETGSGKTTQIPQFVLDAVDIETPDKRRKMMIACTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLER
YKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFNGAPLMKVP
GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEVG
NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVKEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLILKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKLGEIMSEFPLDPQMSKMLVVSSEFNCSNEILSVAAMLSVPNCFVRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFINHRALKAADNVRQQLVRIMSRFNL
KLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLENFPQCEAKRVLEKLYRKKEKDREE
SRNRR
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagagaaaaaggaaggtgagcttgtttgatgttgtggacgagccgtcggct
aagatcgcgaaatcgaacggtttaggtttaacggggatgaacgccaacagctcgatcaac
aagtggaatggacggccttattctcaaaggtattacgatattttggagaagaggaaaacc
ctccccgtttggcaacaaaaagaagagtttttgcaagtattgagggcgaatcaaaccctt
gtcttggtcggtgaaaccggtagcggtaaaactactcagattcctcagtttgtattggac
gccgttgatatagaaactccggataaacgtaggaaaatgatgattgcttgtacccagcct
cgaagagtggctgccatgtctgtttcacgtcgtgttgctgaagaaatggatgtgactatt
ggagaggaggtgggttatagtattcgtttcgaggattgcagtagtgcaaggactgttttg
aagtatttaacagatggtatgcttttaagggaagcgatgacagatcctcttttagaaaga
tataaagtgattattctcgatgaagctcatgaaagaactttggctacggatgtgctgttt
gggcttctgaaagaagttttaaggaatcgacctgaccttaagcttgttgttatgagtgct
acactagaggctgaaaagtttcagggttattttaatggtgcaccacttatgaaggttcca
ggtaggcttcaccctgtggagatattctacactcaggaacctgaaagggattacttggag
gctgcgatacggactgttgtgcagatacacatgtgtgaacctcctggtgatatacttgtt
ttcctaaccggagaggaggagatcgaagatgcctgtcgcaaaataacgaaagaagtagga
aacatgggggatcaagtaggtcctgttaaagtagtgcctctatattcaactcttccacca
gcaatgcaacagaagatttttgagcctgctccacctcctgtgaaagagggtggccctcct
ggaaggaagattgtggtgtctacaaacattgccgaaacttccttgactattgatggcatt
gtttatgttattgaccctgggttttctaaacaaaaagtttataacccacgagtgcgtgtt
gagtccttattggtatctcctatatcaaaggcaagtgcacatcaaagatctggacgtgct
ggaagaacacaacctgggaaatgcttcaggctctacactgagaagagttttaataatgat
ctgcagccgcagacctatcctgaaatattacgttcaaaccttgcaaatacagttctcatc
ttgaagaaactgggaatcgatgatctggtacattttgattttatggacccacctgctccg
gagacattgatgcgtgcattggaagtgttgaattacttgggagcattggatgatgagggt
aacttaacaaagctgggtgagatcatgagtgaattccccttggatcctcaaatgtcaaag
atgctcgtagttagttctgagttcaactgttcaaatgagattctttcagttgccgccatg
ctttcagtacccaattgctttgtacggcctagggaggcacaaaaagctgcagatgaagca
aaagctcggtttgggcatatcgatggtgatcatctcacacttttgaacgtgtaccatgct
tacaaacaaaacaacgaggatcaatcttggtgctatgagaatttcatcaaccatagagcg
ctgaaggctgctgataatgttagacaacagctcgtgcgcattatgtccaggtttaatctc
aagctgtgcagcactgatttcaacagccgtgactactatgtcaacattagaaaggccatg
cttgctgggtatttcatgcaggtagctcatctggagcgcacggggcactacttgacagtt
aaagacaaccaggtggtgcacttgcatccatcaaattgcctggatcacaagccagagtgg
gtcatctacaacgagtatgtcctgacaagccggaattttattcgtactgtgacagatatt
cgtggtgaatggttagtcgatatagcaccacattattatgatctcgaaaacttcccacag
tgtgaggctaagcgagtcctcgaaaagctttacagaaaaaaggagaaggatcgggaggag
agtcgaaacaggagatga
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