Gossypium hirsutum (upland cotton): 107946086
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Entry
107946086 CDS
T04793
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03430
Mismatch repair
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107946086
03460 Fanconi anemia pathway
107946086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107946086
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
107946086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
107946086
NCBI-ProteinID:
XP_016735764
UniProt:
A0A1U8ND41
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All DBs
Position
D12:complement(44606433..44613180)
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AA seq
968 aa
AA seq
DB search
MEGSPQSKSPVIKPINKGVVHRICSGQVILDLSSAVKELVENSLDAGATSIEIALKEYGE
EWFQVIDNGCGISPANFKVVALKHHTSKLADFPDLESLTTFGFRGEALSSLCALGNLTIE
TRTKNEPVATHLTFDHSGLLIAEKKTARQIGTTVTVKKLFSNLPVRSKEFHRNIRKEYGK
LISLLNAYALTAKGVRLVCSNTSRKNLKSVVIKTQGSGSLKDSIIQVFGMNMFNCLEPVS
ICISDDCKIEGFLSRSGQGSGRSMGDRQYFFVNGRPVDMPKVSKLVNEIYKGANSKQYPV
AIMNFIIPTRACDVNVTPDKRKVFFSDESMILQSLREGLQQIYSSSNASYIVNGVDDTNE
AGSFEFCSSPEKSNILSEQSPPAGVNLKVSMREHSPEDKTSFRTVNINAQSLQLSEGSVS
SDLENILTLGVQGTNMVDGVIEANAGQLTSHMDDTAKKDLSGGLTLRHHEDSLKKDFTLQ
VRRMNKIDGFMESNDGGLTTHMNSIASKNSSSPSTSIGKGNSVSRDCSSHSGYVQSSLNK
FVTVNKRKHESISTVLSEVPVLRNQSLHYQSKNSNLNLPALGLRDQVDDSSKLNENEPRK
FLRAHSILDETENPSSPSGNTSGKPGEESENHEKAVPSAGTELIDLFHKNPEDVPEKAST
VPTTESLSSALIVDAPVPPSDKKICSTLEFRFEDLLTKRRQRMSRVLYTGYRFLGMKKTR
CYTAATLELSQPQNVEQKVQALDAATRELEKLFKKEDFSRMKVVGQFNLGFIIGKLDEDL
FIVDQHAADEKYNFEHLAQSTIFNQQPLLRPLRLELSPEEEVVASMHMDIIRKNGFILEE
DPHAPPGHHFNLRAVPFSKNITFGVEDVKDLISTLSDSQGECSIIGSYKMDTSDSVCPTR
VRAMLASRACRSSVMVGDPLGRNEMQKIVEHLADLKSPWNCPHGRPTMRHLVDLTTLSKE
PDENDTSC
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggaaggatcgcctcaatctaagtcccctgtaattaagcccattaacaaaggcgtcgtt
cacagaatctgctccggtcaagtcatattagacctctcctccgccgttaaggaactcgtt
gagaacagcctcgacgctggcgccaccagtattgaaatcgctctcaaagagtacggggaa
gaatggtttcaggtcatcgataatggctgtggtatttcacctgctaatttcaaggtcgtg
gcgcttaaacaccatacgtcgaagcttgcggattttccagaccttgaatctctgactacg
tttggatttagaggggaggcattgagttcgctttgcgctttggggaatctgactattgaa
acgagaacgaaaaatgaacccgttgcaacgcatttaacttttgatcattctggtctgttg
atagctgagaagaaaactgcacggcaaattggtacaactgtcactgtcaagaagttgttt
tcgaatctaccagtgcgaagcaaggaatttcatcgcaacatacgcaaggagtatggcaaa
cttatttccttgttgaatgcatatgcacttacggcaaaaggagtcaggttagtctgcagc
aacacaagcagaaagaatttaaagtctgtggttattaaaacgcagggaagtggttccctc
aaagatagcatcatacaagtttttggcatgaacatgtttaactgcttagagcccgtgtct
atatgtatatcagacgactgcaaaattgaagggtttctatctaggtctggacagggtagt
ggccgcagtatgggagacagacaatacttttttgtaaatggtaggccagtggatatgcct
aaagtgagcaagcttgtgaatgaaatatataaaggtgcaaactctaagcagtatcctgta
gccataatgaattttatcattccaactagagcatgtgatgtcaatgtgactcctgataaa
agaaaagtatttttttctgatgaaagcatgattttgcaatctttgagggagggtttgcag
cagatatattcctcaagtaatgccagttatattgttaatggagttgacgacactaacgaa
gcaggttcctttgagttttgctcttcacctgaaaaatctaatatcctttcagagcagtca
cctccagctggagtcaatttgaaagtttccatgagggaacattctccagaagataaaacc
tcctttagaactgtcaatatcaacgctcaaagtttgcagttatcagaagggtcagtatct
agtgatcttgagaacatactgactttaggagtacaagggacaaacatggtcgatggtgtt
attgaggctaatgcagggcaattgacaagtcatatggatgatacagctaaaaaggattta
tcaggaggattaacccttagacatcatgaggattcattgaagaaggacttcaccttacaa
gtacgcagaatgaataagattgatggttttatggagtctaacgatgggggtttgacgact
catatgaacagtatagctagcaagaactcttcatccccttcaacttcaattgggaaagga
aattctgtaagtagagattgtagtagtcattcaggctacgttcaatcatcactgaacaaa
tttgtaactgtaaataagaggaagcatgaaagcattagtaccgtgttatctgaagtgcct
gtcttaagaaatcaaagtcttcattaccaatcgaagaacagcaatttgaatctgcctgct
ttgggcttaagagatcaagttgatgattcctccaagttgaatgagaacgagcctagaaag
tttctcagagcgcatagcatcttggatgaaactgaaaatcctagttctcctagtggcaac
actagtggaaaacctggagaggaatctgagaatcatgaaaaagcagtgccttctgctgga
acagaactcattgatttattccacaaaaatcccgaggatgtacctgaaaaagcatctaca
gttccaacaacggagtctctatcctctgctttaattgtagatgctcccgtacctccatct
gataaaaagatatgttctaccttggagtttagatttgaggacttattgacaaagaggcgg
cagaggatgtcaagagtactgtacaccggttacagattccttggcatgaagaaaacaagg
tgttatactgctgcgacacttgagctttctcaaccacagaatgtggagcaaaaagtacaa
gctttagatgctgctaccagagagttggagaaacttttcaaaaaagaagactttagccga
atgaaggtggtcgggcaatttaatcttggattcatcattgggaagttagatgaagattta
tttattgtggatcagcatgctgctgatgagaaatacaattttgagcatctggctcaatca
accatctttaaccagcagcctttgcttcggcctctgagattggagctatctcctgaagaa
gaagtagttgcttcaatgcatatggacataatcaggaaaaatgggtttattttggaagag
gatccacatgctccaccagggcaccattttaatctcagagctgttcccttcagtaaaaac
attacttttggagttgaagatgtcaaagatttgatctctactctttctgatagtcaagga
gaatgttcgataatcggtagttataaaatggacacatctgattctgtttgcccaactaga
gttcgtgcaatgttggcatcacgtgcttgcagatcgtctgtcatggtaggagatccactt
ggacgaaatgaaatgcagaagatagtagagcatttggcagacttgaagtctccgtggaat
tgcccacatggacggccaacaatgcgacatttggtagacctgacaaccctaagcaaagaa
ccggatgaaaatgacacaagctgttga
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