Gossypium hirsutum (upland cotton): 107946367
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Entry
107946367 CDS
T04793
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107946367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107946367
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107946367
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Step II factors
107946367
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
nSTAND3
AAA_19
NB-ARC
PhoH
AAA_30
nSTAND_NTPase5
TsaE
Sigma54_activ_2
AAA_29
Motif
Other DBs
NCBI-GeneID:
107946367
NCBI-ProteinID:
XP_016736144
UniProt:
A0A1U8NE75
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All DBs
Position
D12:complement(50150504..50157693)
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AA seq
718 aa
AA seq
DB search
MPSMVESQQPNGNISFKHNRNNNNKPNFFAGRQKILEHRKSLPIASVERRLVEVVQENDV
LIIVGETGSGKTTQIPQYLFDSGFCHDGKTIGVTQPRRVAAVTVAKRVAEECGVELGQKV
GYSIRFEDVTSSSTRIKYMTDGLLLREALLDPYLSRYSVIVVDEAHERTVHTDVLLGLLK
RVQNVRSNHIKNQTSVGHKRASNGAILEKENADPCIGVLKQCQGRNLSPLKLIIMSASLD
AHVFSKYFGGAKAVRVLGRQFPVDVFYTVNPQTDYLDSAIVTIFQIHSEEAPGDILVFLT
GQEEIESVEKQIHENLQRLPEDKRNMKTVTIFSSLPSEQQMRVFAPAPAGFRKVILATNI
AETSVTIPGIKYVVDPGVVKARSYDPVKGMESLIIVPTSKAQAIQRSGRAGREGPGKCFR
LYPESEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDIFGFDFIEKPSRTAIKKSLEELL
LLGALTDEFKLSDPVGRQMARLPLDPVHSKALILASQFKCLDEMLIAVAMLSVESIFYEP
REKLDEARTAKKCFASSEGDHLTLINVYRTSIELLEKRKSEVGKDKAEKVMRKWCKENFI
NSRSLRHARDIHSQIRRLVEQIGLCISSCGDDTLQFRRCLAAAFFLNAALKQPDGTYRAL
ASGEVVQIHPTSVLFRTKADCIIFNEFVKTTNKYIRNITIIDGLWLTELAPHYYAKQE
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaatggtggaatcccaacaacccaacggcaacatctcttttaagcacaaccga
aataataacaacaaacccaatttctttgccgggagacaaaagattttagagcatcggaag
tcgcttcctattgcttcagttgagagaagacttgttgaggtggttcaagaaaatgatgtc
ttaatcattgttggagaaactggaagtgggaaaacaacccagatacctcagtatttattt
gattctgggttctgccatgatgggaaaactattggggtaacgcagccgaggcgtgttgct
gcggtcacagttgcgaaaagggtagccgaagaatgtggtgttgagttgggacaaaaagtt
gggtattcaattaggtttgaggatgtcacctcaagctcaacaaggatcaagtacatgact
gatggattacttcttagggaggcattattggatccgtatctctctaggtattcagtgata
gttgttgatgaagctcatgaaagaactgtccacactgatgtattgttgggtttgcttaaa
agggtacaaaatgtgaggtccaaccatataaaaaatcaaactagtgttggtcataagagg
gcaagcaatggtgcaatcttggagaaagaaaatgctgatccctgcattggtgttttaaag
caatgccaggggaggaatttgtcacctttgaaattaatcatcatgtctgccagcttggat
gcacatgttttctctaaatactttggtggtgcaaaagctgttcgtgttctaggacgacaa
tttccagttgatgtattctatactgtcaatccccagactgattatctagattctgctatt
gtcaccatcttccagattcattcggaggaggctcctggtgacattcttgtgtttttgact
gggcaagaagagattgaatcggttgaaaaacaaatccatgagaatttacaacggttacct
gaagataagcggaacatgaaaacagttactatattctcatccctcccttcagaacaacaa
atgcgagtttttgcacctgctcctgcaggatttcgtaaggttatactagcaactaatatt
gctgagacatccgtgacgatacctgggattaagtatgtcgtagatcctggagttgtaaaa
gcacgttcatatgatccagtcaaggggatggaatcattgattattgttccaacctcaaaa
gcacaagcaatacagagaagtggacgtgcagggcgtgaaggacctgggaagtgtttccgt
ctctatcctgagagcgagtttgaaaagcttgaggattcaaccaagccagagattaagcgt
tgcaacctctcgaatgtcattttgcagctcaaggccctgggtgttgatgatatatttggg
tttgacttcatagagaaaccctcaaggacagctattaaaaagtcattggaggagttgctc
ttgctaggtgctttaactgatgaattcaaactgtcagatccagttggtcgtcaaatggct
cggctcccattagatcctgttcattctaaagctctcatcctagctagccagttcaagtgc
ctggatgaaatgttaattgctgttgcaatgctttcagtagaatctattttttatgagcca
cgtgagaagttggatgaggcaagaactgcaaagaaatgctttgcaagttctgagggagac
catctcactttgattaatgtttatcgaacgtctattgagttattggagaagagaaagtcc
gaggttggcaaagataaggctgaaaaagttatgagaaagtggtgcaaggaaaactttatc
aatagccgttctttgcggcatgctcgtgacatccacagtcaaatccgccgacttgttgaa
caaataggcctttgcatttcttcttgtggagacgacacacttcagttccgcagatgcctt
gctgctgcttttttcctcaatgcagctttgaagcaacctgacggaacatatagggctttg
gcaagtggtgaggtggtacagatccatccaacatctgtgttattccgaacaaaagcggac
tgcattattttcaacgagtttgtcaaaactactaataagtacatccgcaatataacaata
atcgatggcctttggttgacagagttagccccccactattacgccaagcaggagtag
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