Gossypium hirsutum (upland cotton): 107946592
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Entry
107946592 CDS
T04793
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107946592
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107946592
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107946592
NCBI-ProteinID:
XP_016736480
UniProt:
A0A1U8NBT3
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Position
D12:54114999..54117071
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AA seq
439 aa
AA seq
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MALLPSIKPPHAHSFPLKLKPFPSLLLQNTTLKATMPLPSLSLLFLFTSLLIPSPISSSP
VQDPELVVEDVHRAINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKN
AIGGRDGKIYVVTDSSDNDAVNPKPGTLRHAVIQDEPLWIIFARDMTIRLKEELIMNSFK
TIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNAMVRDSPRHYGWRTISDGDG
VSIFGGSHVWVDHNSLSNCNDGLVDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKN
MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFTAPN
DRFSKEVTKHEDAPESDWKSWNWRSEGDLMVNGAFFTASGAGASSSYSKASSLGARPSSL
VATITTNAGSLNCKKGSRC
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggctttactcccctctataaaacccccccacgcccattccttccctctcaagctcaaa
ccctttccctccctcttattacaaaacaccaccctcaaagccacaatgccactcccttcc
ctttctctcctcttcctcttcacttctctcctaatcccctctcccatttcctcttcccct
gttcaagaccctgaacttgttgtcgaagatgtgcatagggccatcaatgcgtctaggagg
aaccttggatatctatcctgcggcaccggcaaccccattgatgactgctggcgatgtgac
cctaactgggagaagaaccgccagaggctagcagactgtgcaattgggttcggcaagaat
gccattggtggaagagatggtaagatttatgttgtcactgactcgagtgacaatgatgcc
gtgaaccccaaaccgggaactttacgacatgccgtgattcaagatgaaccgttgtggatc
atttttgcccgggacatgaccatccggttgaaggaggaactaatcatgaactcgttcaag
accatcgatgggcgtggtgccagtgttcacattgcagggggtccttgtataaccattcag
tatgtgaccaacattatcattcatggactcaacatccatgactgcaagcaaggagggaat
gctatggtgagggactccccacggcattacggttggcgaaccatatcggatggggatggt
gtgtctatcttcggtggtagccatgtttgggtggatcataactccttgtccaactgcaat
gatggtctggttgatgccattcatgggtccaccgcaatcaccatctcaaacaactacatg
actcaccatgataaagtcatgcttttggggcacagtgattcctatactcaagacaagaac
atgcaagtcactatagcctttaatcactttggtgaagggcttgttcaaagaatgccaaga
tgtagacatgggtatttccatgtggttaacaatgactacacccattgggaaatgtatgcc
attggaggaagtgcaaacccaactattaatagccaaggcaacagatttacagcaccaaac
gatagattcagcaaagaggtgaccaagcatgaagatgcaccagagagtgactggaagagc
tggaattggagatcggaaggcgacctgatggtgaacggtgcatttttcacggcgtcgggt
gccggtgcctcgtcgagctattccaaggcttcgagcttgggtgctaggccatcttcactg
gtggcaaccataaccactaatgctggttcacttaattgcaagaaaggttctcgttgctga
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