Gossypium hirsutum (upland cotton): 107946806
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Entry
107946806 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit C
KO
K07466
replication factor A1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
ghi03440
Homologous recombination
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107946806
03420 Nucleotide excision repair
107946806
03430 Mismatch repair
107946806
03440 Homologous recombination
107946806
03460 Fanconi anemia pathway
107946806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107946806
03032 DNA replication proteins [BR:
ghi03032
]
107946806
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107946806
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107946806
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107946806
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107946806
MMR (mismatch excision repair)
107946806
DSBR (double strand breaks repair)
HR (homologous recombination)
107946806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
RADX
DUF223
DUF936
Motif
Other DBs
NCBI-GeneID:
107946806
NCBI-ProteinID:
XP_016736757
UniProt:
A0A1U8NCK3
LinkDB
All DBs
Position
A12:101949173..101953042
Genome browser
AA seq
805 aa
AA seq
DB search
MEVNLTGGAVARIINREVSTEKDLKPLLQVIELKEVQTTSKNPQQQQQQQEPKKSERYRL
LLSDGSLTQQGMLATSKNELVKSSKLQIGSVIQLTQYICNVIQDRMIVIIIELDVIVEKC
DIIGKPVAAPRSSRLTQAPTDQPGTVMAQSNSLGGSSVAGGMADRLNSAGTTLQQPRMNQ
WHGNCRSNESDQINYPAANAPPSYPKADPSAGFPGSSPLDRPYGVQSTGFHNPRPATSRP
LSTSNYQSVPTYQQPSPMYTNRGPVAKNEAPPRIIPISALNPYQGRWTIKARVTAKGELR
RYNNARGEGKVFSFDLLDSDGGEIRVTCFNTVVDQFYNQIETGKIYLISRGSLKPAQKAF
NHLNNEHEILLDSTSTIQPCYEDDNRIPRQQFHFRTISDIEGMENNSIVDIIGVVSFISP
AASIMRKNGIETQKRTLHLKDMSGRSVELTLWGSLCNAEGQKLQSLCDSGEFPVLAVKAG
RVNDFNGKAVGSISSTQLFIDPDFPEAYSLKNWFVTDGRNTPTVSISRETSSVSRTDNRK
TLSQIKDEKLGTSEKPDWITVAARIAYIKLDNFCYTACPIMNGDRQCNKKVTNNGDGKWW
CDKCDRSVDECDYRYIIQLQIQDHTGIIWVTAFQESGQDIMGCXAKDLYYLRYENQDDEK
FMEITRRVMFNKYIFKLKVKEETFSDEQRVKSTVVKVEKVNFSSEARYLLDLIDKIKAND
SGLFAPKTEFTTPNTGLDYTGVGIDGRRDLAPPTASREYGLPVNQGGQYGNHYGGSGLRE
SASNMDIFCNSCGLQVIALQIVLPS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaaatctgacgggaggggcggtggctcgtattataaacagagaggtgtcgaca
gagaaggatttgaaacctttgcttcaagtcatagagttgaaagaggttcaaacgacgtcg
aagaatccgcagcagcagcagcagcagcaagaaccgaaaaagagcgagaggtataggcta
ttgctgtcggatgggtcgttgacgcagcaagggatgctcgctaccagtaagaatgaactt
gtgaaatcctcgaagttgcaaattggctccgttattcaattgactcagtacatttgcaac
gtaatccaagatcgcatgattgttattatcattgagttggatgtgatagttgaaaaatgt
gatattattgggaagcctgtagcagcaccaagatcttctaggctaacacaagcccctact
gatcaacctgggacggtgatggcacagagcaattcattagggggaagctcagttgctggc
ggcatggctgataggctgaactcagctgggaccactctgcaacagcctagaatgaatcaa
tggcatggtaattgtcgttcaaatgaatctgatcagataaactatcctgctgcaaatgca
ccaccctcttatcccaaagcagatccttctgctggttttcctggatcatcacctctagat
agaccatatggtgttcagagtacgggtttccataatcctaggccagcaacttcacgtcct
ctaagcacctctaactaccaatccgtacctacgtatcaacagccatccccaatgtacact
aaccgagggcctgttgccaagaatgaggcaccacccaggataatcccaatttctgctctg
aacccatatcagggccggtggacaataaaagccagagtaacagcaaagggagagcttagg
cgctataacaatgcacgtggtgaaggaaaagttttctcgtttgacctccttgattctgat
ggtggagaaatacgggtgacctgctttaatactgtggttgaccaattctataaccagatt
gaaactggtaagatatatttgatttctaggggaagtctaaaacccgctcagaaggcattt
aatcaccttaataatgagcatgaaatacttcttgatagcacatcaacgatacagccatgt
tatgaggatgacaacagaattccacgacagcaatttcatttccgtaccataagtgatatt
gaaggtatggagaacaatagtattgtggatataattggtgtggtgtcatttatcagtcct
gctgcttcaataatgagaaaaaatggtattgaaactcagaagagaacccttcatttgaag
gacatgtctggccgaagtgttgagttaactttatggggatctttatgcaatgctgaagga
caaaagctccaatctttgtgtgattctggggagtttccagttctggctgtgaaagctggt
agggtgaatgattttaatgggaaggcagtgggttctatctcttcaacccagttatttata
gatcctgattttcctgaggcttatagtttaaagaattggtttgtcactgatgggaggaac
actcctactgtctctatctccagggaaacgtcaagtgtgagtagaacagataatagaaaa
actttatcacaaatcaaagatgagaagctcggaacttctgagaaaccagattggattaca
gtggcagcaaggattgcatacatcaagttggacaatttctgctatacagcttgtcccatc
atgaatggggatcgtcaatgcaacaaaaaggttacaaataatggagatgggaagtggtgg
tgtgataaatgtgataggtcagtagatgaatgtgactacaggtatataattcagttgcag
atacaggatcatacaggcataatatgggtgactgcttttcaggaatctggtcaggatatc
atggggtgcnctgcaaaagatttgtactatctgaggtatgaaaaccaagatgatgaaaaa
tttatggaaatcactcgtcgagttatgtttaataaatacatattcaagttaaaggtaaag
gaggaaacttttagtgatgaacagcgtgtgaaatcaacagtggtgaaagtagaaaaagta
aatttttcgtcggaagcgaggtaccttttggatttgattgataagattaaagcaaatgat
tcaggtctttttgcaccaaagacagagtttaccactcccaatactggactggattacacc
ggagttgggattgatggaaggagggatcttgcaccaccaactgctagtagagaatatgga
ttaccagtaaaccaagggggtcaatatggaaaccattatggtggttctgggcttagagaa
tctgcttcgaacatggatatattctgtaatagttgtgggttacaggtcatagctctacaa
attgtcctaccatcatga
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integrated database retrieval system
