Gossypium hirsutum (upland cotton): 107947088
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Entry
107947088 CDS
T04793
Name
(RefSeq) protein SEH1
KO
K14299
nucleoporin SEH1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107947088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107947088
04131 Membrane trafficking [BR:
ghi04131
]
107947088
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107947088
Membrane trafficking [BR:
ghi04131
]
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
107947088
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_WDHD1_1st
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
Beta-prop_Aladin
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
WD40_Gbeta
DSE1_N
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
107947088
NCBI-ProteinID:
XP_016737131
UniProt:
A0A1U8NDQ7
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All DBs
Position
D12:59326956..59329530
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AA seq
325 aa
AA seq
DB search
MEKPVATLDKGAICSAWNYCGQRLAAGSVDGYLSILDSRDPLSSSFTSSSKFKVHEGCVV
KVAWIPPEYGVAVACIAEDGTLSIWEELVEGTNPLEWKLCTSFKTSSKVLDVQFSVTQTS
LKMFAAYSDGFVKVFELLDPLELKNWQLQAEFQNVIDSVSIVGKASCLTACISWNPQNGE
GQESSFILGFNSDTPQLNSPKVWEFDPAHQRWLPVAELALPGDKGDQIYSVAWAPNIGRP
YEVIATASEKGISVWRVGSTTDMDGRLSMDKVALLSGHNSEVWQMEWDMSGMTLATTGGD
GRVRLWQSNLNGTWHEQATLEPTSS
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaccagtagcgacactcgataaaggcgcaatatgctcggcctggaactactgc
ggccagagattagccgccggctccgtcgatggttatctctcaattttagattctcgtgac
cctttgtcttcttcattcacttcctcctccaaattcaaggtgcacgaaggttgcgttgtg
aaggttgcttggatcccgcccgagtatggggttgctgttgcttgcattgcagaagatggg
actttatcaatatgggaagagcttgtagaaggtacaaatcctcttgaatggaagctatgc
acgagcttcaaaactagctctaaggttttagatgttcaatttagtgtcactcaaacgagc
ttgaaaatgtttgctgcttactcagatggcttcgtgaaagtctttgagctcctcgatcct
ttggaactcaagaattggcaacttcaggccgaatttcaaaatgttatagattcggtttcc
atagtagggaaggcttcatgcttgacagcatgtatttcatggaatccacaaaatggtgaa
ggccaagaatcaagctttattttgggtttcaattctgacactccacaactcaattccccc
aaggtgtgggaatttgatccagctcatcagagatggctgccagtagcagagttggctttg
cctggtgacaagggagatcaaatatattctgttgcatgggcaccaaacattggacggcca
tatgaggtaatagctactgcatctgaaaaaggaatttctgtatggcgtgttggatcaacc
actgacatggatggaaggctctccatggataaggttgcattgctttctggacataacagt
gaggtgtggcagatggaatgggatatgagtggaatgaccttggcaaccaccgggggtgat
gggcgtgtaaggctgtggcaatctaacttgaacggcacttggcatgaacaagcaacgctt
gaacccacttcatcttag
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integrated database retrieval system