Gossypium hirsutum (upland cotton): 107947221
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Entry
107947221 CDS
T04793
Name
(RefSeq) rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107947221
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107947221
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
RhgB_N
BsuPI
Motif
Other DBs
NCBI-GeneID:
107947221
NCBI-ProteinID:
XP_016737286
UniProt:
A0A1U8NE48
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Position
D11:31354975..31360369
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AA seq
675 aa
AA seq
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MEKVAHRSHLGQLVLWLLMIVELSLFYSACSAEIPVRKILNLGDCNPHVRLQISHHNVVI
DNGLIEVTIENPSGHVTGIKYMGMDNVLECGNPNSNRGYWDFVWDNSTFDKMETKHVKVV
AHTDELVEISFTKNWDFRTDHGKTVPLNIDKRFIVRRGVPGVYMYGIFERQEDFPDAQIY
QLRIVFKLKEDKFRFMAISDTRQGVMPRGEDRDNTRSQTLAFKEAVLMTNPSNPQFRGEV
DDKYQYSCENKDNKLHGWISDDDAVGFWIITPSNEFRTGGPHKQDLTSHVGPIALSMFVS
THYTGIDIDVTYKKGEAWRKAFGPVLIYLNSASSDDDCRKKLWNDAKRQLSEEIESWPYN
FTRSEDLPHAGDRGEVCGQLLVRDRCVDEELMQAQSAFVGLAVPGNVGSWQTEGKGYQFW
TETDNTGRFNIKNVRRGEYNLYAWVHGFIGDYKLDLSITIQPGNKVNLGTLIYDPPRNGP
TLWEIGIPDRTVAEFFIPEPDPTFVNPLCLDAADKFRQYGLWDRYSDIYRHGDVVYTVGV
SNYSRDWFFAHVLRNTGNITDLSTTTWQIKYNLQDVNEKGNYTLQLALAAASYAELQIRF
NNPDAIQPCFTTTRIGYDNAVARHGIHGLYRLYSINIPGNRFIRGNNTIFLTQTRSHALF
DAVMYDYIRLEAPAV
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggtggcacacaggagccatttgggacagcttgttctatggctactaatgata
gttgaattgtcactcttttactctgcatgttctgctgaaatcccagtcagaaaaatcctg
aaccttggagattgtaaccctcatgtccggttgcaaataagtcatcacaacgtggttatt
gataatggacttattgaagtcactattgagaacccatctggtcatgtgacaggaataaaa
tatatggggatggataatgtgcttgaatgtggaaacccaaactctaatagagggtactgg
gactttgtctgggataacagtacctttgacaaaatggaaacaaaacatgtgaaggtcgta
gcacatactgatgagctagtggagatttcctttaccaaaaattgggatttcagaacagac
catggcaagacagttcccttaaacattgacaaaaggttcatagtccgacgaggcgttcca
ggggtatacatgtatggtattttcgagcgccaggaggattttccggatgcacagatatat
caattaagaattgttttcaagctcaaggaagacaagtttaggttcatggcgatatcggac
accagacaaggggttatgcctaggggagaagatcgagataatactcgcagtcagactctt
gccttcaaggaagctgttctaatgaccaatccatccaatccacaatttagaggagaggtt
gatgacaagtaccaatattcatgtgaaaacaaagataacaagcttcacgggtggatatcc
gatgatgatgcggtgggtttctggataatcacccctagcaatgaattccgaactggtggc
ccacacaagcaggacctcacttctcatgttggtcccatagctctctctatgtttgttagt
acacattataccgggatcgacatagatgtaacatacaagaaaggagaggcttggagaaaa
gcttttggtccagttcttatctatcttaattctgcttcttcggatgatgattgccgcaaa
aaactctggaatgacgctaaaagacagttgagtgaagaaatcgaaagctggccatacaat
ttcacccgatcagaagatcttcctcacgctggagatcgaggagaagtttgcggtcaatta
ctagtacgagacagatgcgtggatgaggaattaatgcaggcgcaatccgcctttgtgggg
ttggcagtgcctggaaatgtaggatcatggcaaacggaaggaaagggctatcaattttgg
accgaaacagacaacactggccgtttcaatattaaaaatgtccggcgaggggagtataat
ttgtacgcatgggtccatggtttcattggagactacaaattggatctcagcatcaccatt
caacctggaaacaaggtcaacttgggtaccctcatatatgatcctccaagaaacggccct
acattgtgggaaatcgggattcctgaccggacggttgctgagttcttcataccggaaccc
gacccaacatttgttaacccattgtgcctcgatgccgccgacaaattcagacaatacgga
ttgtgggatcgctactcagatatttatcgtcatggtgatgtcgtctacactgtgggtgtc
agcaattattctcgggattggttctttgctcatgttctcagaaatacagggaatattacc
gacttgtcaacaaccacatggcagattaaatacaatctccaagatgttaacgagaaagga
aactacactctccaactagccttggcagcagcttcgtatgctgaattacagattcggttc
aacaatccagatgctattcaaccttgttttacgacgacaagaattggttacgataatgcc
gtagcaaggcatggaatccacggcttgtacagattgtatagtattaatatacctggtaat
agatttataagagggaacaacacgatctttctaactcagacaagaagccatgccttattc
gacgcagttatgtacgactatattcgattagaagctcctgcagtttaa
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