Gossypium hirsutum (upland cotton): 107947274
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Entry
107947274 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7 isoform X2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107947274
03036 Chromosome and associated proteins [BR:
ghi03036
]
107947274
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107947274
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
107947274
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
107947274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
107947274
NCBI-ProteinID:
XP_016737356
UniProt:
A0A1U8NEB7
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All DBs
Position
D12:complement(61973546..61980233)
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AA seq
704 aa
AA seq
DB search
MPSLALSDHKHKKEDKKMKNKLALKNRETDKKVKKLKDPKVNEDENDLEVKKSKKKRKAS
ELQLEEDERSETSSEIVEPVDVKVKVKVKVTEKKKKKNKEKLEKDDEDEGKSEDPNLVSR
FRISEAVRKKLKSKGIESLFPIQALTFDIILDGTDLVGRARTGQGKTLAFVLPILESLTN
GTVKASRKNGYGRAPSVLVLLPTRELAKQVFEDFEVYGEVVGLTSCCLYGGAPYHTQEMK
MKKGVDIVIGTPGRIKDHIERGNIHLGSLKFRVLDEADEMLRMGFVDDVELILGKVKDAS
KVQTLLFSATLPDWVKGIAARFLKTSKKTVDLVGKEKMKASTSVKHIVLPCSKSARSQLI
PDIIRCYSSGRTIIFTETKDSASELAGLLPGSRALHGDIQQAQREVTLNGFRSGKFMTLV
ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKRSSISKIE
RESGVKFEHISAPQPVDVAKSAGVEAAKIIAEVSDSVIPAFKSIAQELLETSGLSAEDLL
AKALAKAAGYSEIKSRSLLTSMENHVTLLLEAGKPIYTLSFVFGVLKRFLPEEKVHSVQG
LTLTADGMGAVFDVAEDDVGTFLAGAENANNVRLETLKKKLPRLQERDQSRGRFSGGRGD
RSGGGGSCGGGKFSGGRGGRGGFSDRVNDRFSGGGRGRYSSKKW
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgccttcattagctttatccgatcataaacacaagaaagaagataaaaagatgaagaat
aaactcgccttaaaaaatcgagaaaccgataagaaagtgaagaaactgaaggatccgaag
gttaacgaagatgaaaacgatttggaggtaaagaagagtaagaagaaacggaaggcatcg
gagcttcagttagaagaggacgaaaggagcgagacgagctcggagatcgtcgagccggta
gatgtgaaggtgaaggtaaaagtgaaagtgacagagaagaagaaaaagaaaaacaaagag
aaattggagaaggatgacgaggatgaaggtaaaagtgaggatccgaatttggtatcgagg
tttcggatctcggaagcagttaggaagaaacttaaatcgaaggggattgaatctttgttt
cctattcaggccttgacttttgatattattcttgatggcactgatttggttggccgtgct
cgtaccggtcagggtaagacactggcctttgtgttgccaatattggagtctttaaccaac
gggactgtaaaagcatcaaggaagaatggatatggcagggcaccaagtgttctggtactt
ttaccaactagggaactggctaaacaggttttcgaggactttgaagtttatggcgaggtg
gtggggttgacatcatgttgtttatatggaggagctccgtaccacacccaagagatgaaa
atgaagaaaggagttgatatagttatcgggacacccggccgcataaaggatcacatagag
agggggaatattcacttaggttcattgaaatttcgagttcttgatgaggcggatgaaatg
ctgagaatgggatttgttgatgacgttgaacttatattaggcaaggtaaaggatgcaagt
aaggttcagacacttctttttagtgccaccttgccagactgggtgaagggtattgcagca
agatttcttaaaacaagtaagaagactgttgatcttgttggtaaagagaagatgaaggct
agtaccagtgttaagcatattgttttaccctgttctaagtctgcaagatcacagttgatc
ccagatattattcgttgttatagcagtggacgtactattatattcactgagacaaaagat
tctgcttcggagctggctggcttattgcctggatcccgagctttgcatggggacatacag
caagcgcaacgtgaggtcaccctgaatgggtttcggtcaggcaagttcatgacattagtg
gctacaaatgtggcggcaaggggattagatatcaatgacgtgcagttaattatccagtgt
gagccaccgcgtgatgtagaagcatatattcatcggtctggacgaacagggagagcaggc
aatactggagttgctgtcatgctttatgatcctaaaaggtcgagcatatctaagatagaa
agagaatctggagtgaaatttgagcacatatctgctcctcagccagttgatgtagctaaa
tctgctggtgtagaagcggccaaaataatagccgaagtctctgacagtgtaattcctgcc
ttcaagtccattgctcaggagctattagagacttctggtttatcagcagaagatctactt
gccaaagcactagccaaggctgcaggttattctgaaataaagagtagatcccttctaaca
tctatggagaaccatgttacattacttcttgaagctggaaaacctatttacacactttca
tttgtttttggtgtgttgaaaagattcttgcctgaggaaaaggttcactcagtgcaggga
ctgacccttactgctgatggaatgggtgcagtatttgatgttgcagaagatgatgtcgga
acatttctggctggtgctgaaaatgcaaataatgttagattagagacgttgaagaaaaaa
ttgccacgtttacaagaaagagaccagtcaagagggagattcagtggtggaagaggtgat
agaagcggcggcggcggaagttgtggtggtggtaagttctctggcggcagaggtggccga
ggtggattttctgatagagtaaacgatcggttttcgggtggtgggcgaggccgctacagt
agtaagaaatggtga
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