Gossypium hirsutum (upland cotton): 107947368
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Entry
107947368 CDS
T04793
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
KO
K07466
replication factor A1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
ghi03440
Homologous recombination
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107947368
03420 Nucleotide excision repair
107947368
03430 Mismatch repair
107947368
03440 Homologous recombination
107947368
03460 Fanconi anemia pathway
107947368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107947368
03032 DNA replication proteins [BR:
ghi03032
]
107947368
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107947368
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107947368
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107947368
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107947368
MMR (mismatch excision repair)
107947368
DSBR (double strand breaks repair)
HR (homologous recombination)
107947368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
RADX
zf-CCHC_3
zf-CCHC_2
DUF223
zf-CCHC_4
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
107947368
NCBI-ProteinID:
XP_016737503
UniProt:
A0A1U8NHQ5
LinkDB
All DBs
Position
D12:56012982..56016771
Genome browser
AA seq
861 aa
AA seq
DB search
MEVNLTGGAVARIINREVSTERDLKPLLQVIELKEVQTTSKNPQQQQQQQQQQEPKKSER
YRLLLSDGSLTQQGMLATSKNELVKSSKLQIGSVIQLTQYICNVIQDRMIVIIIELDVIV
EKCDIIGKPVAAPRSSRLTQAPTDQPGTVMAQSNSLGGSSVGGSMADRLNSAGTTLQQPR
MNQWHGNSRSNESDQINYPAANAPPSYPKADPSAGFPGSSPLDRPYGVQSTGFNNPRPAT
SRPLSTSNYQSVPTYQQPSPMYTNRGPVAKNEAPPRIIPISALNPYQGRWTIKARVTAKG
ELRRYNNARGEGKVFSFDLLDSDGGEIRVTCFNAVVDQFYNQIETGKIYLISRGSLKPAQ
KAFNHLNNEHEILLDSTSTIQPCYEDDNRIPRQQFHFRTISDIEGMENNSIVDIIGVVSF
ISPAASIMRKNGVETQKRTLHLKDMSSRSVELTLWGSLCNAEGQKLQSLCDSGEFPVLAV
KAGRVNDFNGKAVGSISSTQLFIDPDFPEAHSLKNWFVTDGRNTPTVSISRETSSVSRTD
NRKTLSQVKDEKLGTSEKPDWITVAARIAYIKLDNFCYTACPIMNGDRQCNKKVTNNGDG
KWWCDKCDRSVDECDYRYIIQLQIQDHTGIIWVTAFQESGQDIMGVPAKDLYYLRYENQD
DEKFMEITRRVMFNKYIFKLKVKEETFSDEQRVKSTVVKVEKVNFSSEARYLLDLIDKIK
ANDSGLFAPKAEFTTPNTGLDYTGVGIDGRRDLAPPTASRENGLPVNQGGQYGNHYGGSG
LRESASNMDIFCNSCGVTGHSSTNCPTIMNGPVQAIGRGYSDRVFTGASVGGVSGECFKC
HQTGHWARDCPNSGRLPPLKH
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaaatctgacgggaggggcagtggctcgtattataaacagagaggtgtcgacg
gagagggatttgaaacctttgcttcaagtcatagagttgaaagaggttcaaacgacgtct
aagaatccgcagcagcagcagcagcagcagcagcagcaagaaccgaaaaagagcgagagg
tataggctattgctatcggatgggtcgttgacgcagcaaggaatgctcgctaccagtaag
aatgaacttgtgaaatcctcgaagctgcaaattggctccgttattcaattgactcagtac
atttgcaacgtaatccaagatcgcatgattgttattatcattgagttggatgtgatagtt
gaaaaatgtgatattattgggaagcctgtagcagcaccaagatcttctaggctaactcaa
gcccctactgatcaacctgggacggtgatggcacagagcaattcattagggggaagctca
gttgggggcagcatggctgataggttgaactcagctgggaccactctgcaacagcctaga
atgaatcaatggcatggtaattctcgttcaaatgaatctgatcagataaactatcctgct
gcaaatgcaccaccctcttatcccaaagcggatccttctgccggttttcctggatcttca
cctctagatagaccatatggtgttcagagtacgggtttcaataatccgaggccagcaact
tcacgtcctctaagcacctctaactaccaatccgtacctacatatcaacagccatcccca
atgtacactaaccgagggcctgttgccaagaatgaggcaccacccaggataatcccaatt
tctgctctgaatccatatcagggccggtggacaataaaagccagagtaacagcaaaggga
gaacttaggcgctacaacaatgcacgtggtgaaggaaaagttttctcttttgacctcctt
gattctgatggtggagaaatacgggtgacctgctttaatgctgtggttgaccaattctat
aaccagattgaaactggtaagatatatctgatttctaggggaagtctaaaacccgctcag
aaggcatttaatcaccttaataatgagcatgaaatacttcttgatagcacatcaacaata
cagccatgttatgaggatgacaacagaattccaagacagcaatttcatttccgtaccata
agtgatattgaaggtatggagaacaatagtattgtggatataattggtgtggtatcattt
atcagccctgctgcttcaataatgagaaaaaatggtgttgaaactcagaagagaaccctt
catttgaaggacatgtctagccgaagcgttgagttaactttatggggatctttatgcaat
gctgaaggacaaaagctccaatctttgtgtgattctggggagtttccagttctggctgtg
aaagctggtagggtgaatgattttaatgggaaggcagtgggctctatctcttcaacccag
ttatttatagatcctgattttcctgaggctcatagtttaaagaattggtttgtcactgat
gggaggaacactcctactgtctctatctccagggaaacgtcaagtgtgagtagaacagat
aatagaaaaactttatcacaagtcaaagatgagaagctcggaacttctgagaaaccagat
tggattacagtggcagcaaggattgcatacatcaagttggacaatttctgctatacagct
tgtcccatcatgaatggggatcgtcaatgcaacaaaaaggttacaaataatggagatggg
aagtggtggtgtgataaatgtgataggtcagtagatgaatgtgactacaggtatataatt
cagttgcagatacaggatcatacaggtataatatgggtgactgcttttcaggaatctggt
caggatatcatgggggtgcctgcaaaagatttgtactatctgaggtatgaaaaccaagat
gatgaaaaatttatggaaatcactcgtcgagttatgtttaataaatacatattcaagtta
aaggtaaaggaggaaacttttagtgatgaacagcgtgtgaaatcaacagtggtgaaagta
gaaaaagtaaatttttcgtcggaagcgaggtaccttttggatttgattgataagattaaa
gcaaatgattcaggtctttttgcaccaaaggcagagtttaccactcccaatactggactg
gattacaccggagttgggattgatggaaggagggatcttgcaccaccaactgctagtaga
gaaaatggattaccagtaaaccaagggggtcaatatggaaaccattatggtggttctggg
cttagagaatctgcttcgaacatggatatattctgtaatagttgtggggttacaggtcat
agctctacaaattgtcctaccatcatgaatggtccagtacaggccattggtaggggctat
tctgatagagtatttactggggcaagtgttggtggtgtctcaggtgagtgctttaaatgt
catcaaactggacattgggccagagactgcccaaactctggacgtttacctccattgaag
cactga
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integrated database retrieval system
