Gossypium hirsutum (upland cotton): 107948231
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Entry
107948231 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107948231
03041 Spliceosome [BR:
ghi03041
]
107948231
03036 Chromosome and associated proteins [BR:
ghi03036
]
107948231
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107948231
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107948231
mRNA cycle factors
Common to processing body (P body) and stress granule
107948231
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107948231
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107948231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107948231
NCBI-ProteinID:
XP_016738195
UniProt:
A0A1U8NGU2
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All DBs
Position
A04:complement(21253927..21259182)
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AA seq
625 aa
AA seq
DB search
MRTSWADSVANSASEIAVSDNSSVPRPTRSTYVPPHLRNRQASDAPNLPGPATERAAFTG
TAGGSLGSRWSSGPPKPEMGRPGPGYGYAGAVAVAGRGGSGGGWNNRSRGWDRREREVNP
FDDDVDDKTDDAEQAFSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDLLNQN
IRRCKYVRPTPIQRHAIPIALAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRVA
RTVYPLALILSPTRELSCQIQDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVA
TPGRLVDLLERARLSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPNRGVRQTMLFS
ATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQRENG
AHGKQALTLVFVETKKGADSLEHWLCINGFPATTIHGDRTQQERELALRSFKTGKTPILV
ATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSLARPL
AELMQEASQEVPAWLTRYASRAPYGGSKGRRSGGGRFGGRDFRRESSFGKNLDYYGGGGN
SGSGYGVPSSNYGGGYAPGVASAWD
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttcgtgggcagattctgttgcaaactctgcatctgaaattgcagtttcagac
aatagctccgtacctcgtccaactcgatccacttatgtcccgccccaccttcgtaaccgt
caagcttcggacgcacctaacctgccaggtccggctactgagagggcagcttttactgga
accgctggtgggtccctgggctcccgatggagcagcggcccgcctaagcccgaaatgggg
cggcctggtccgggttatggttacgctggagctgtagctgtagctggacgaggtggcagc
ggcggtggttggaataatagaagcagaggttgggataggagagaaagggaagtaaaccca
tttgatgatgatgttgatgataagactgatgatgccgaacaagcttttagtgagcaagag
aacacggggatcaactttgatgcttacgaggatattccggtggaaaccagtggtgaaaat
gtaccccctcctgtaaatacatttgccgaaatagatttaggggacctgttgaatcaaaat
attagaaggtgcaagtatgtgagacccactcccattcaacgccatgctatccctatagca
ttagctggaagggatctaatggcttgtgctcaaaccgggtcagggaagacagctgctttt
tgctttccaattattagtggcattatgcgggagcagtatgttcagagaccacgtgtagca
cgaaccgtttaccctcttgctctcattctatcacccaccagggagctttcttgtcagata
caagacgaggccaaaaagttctcatatcaaactggtgtcaaagtggtggttgcctatgga
ggagcaccaattaatcaacagttgcgagagctggagagaggagttgatattcttgtggca
actccaggacgattagttgatttgctagagagagctagattatcattgcagatgattagg
tacttggcccttgatgaggcagatcggatgcttgatatgggttttgaaccacaaatcaga
aagatagtggagcaaatggacatgcctaatcggggtgtcagacagacaatgctgtttagt
gccacctttccaagagagatacagagacttgcctctgattttctttcaaattacatattc
ttagccgttgggagggttggttcaagtacagatttgattgttcaaagggttgaatttgtt
catgagtctgataagaggagccatctcatggatcttctgcatgcacagagggaaaatgga
gctcatggcaagcaagctttgacattagtttttgtggagaccaaaaagggagctgactca
ttggaacattggttgtgcattaatggattcccagcgacaaccattcatggtgataggact
cagcaggaaagggaactggcattaagatctttcaagactggaaagaccccaattttggta
gcaactgatgtggctgctcgtggtcttgatataccccatgtagctcatgtgatcaacttt
gatcttcccaatgatattgatgattatgtccatcggattggaaggacagggcgtgctggt
aaatcaggattggctacagctttctttaatgagggcaatttgtccctggcgaggcctcta
gctgagctgatgcaagaagcaagtcaagaggtacctgcttggctcacccgttatgcatcc
cgagctccttatggaggtagcaaaggtcgacgatctgggggagggcgttttggtgggcgt
gatttcagaagggaaagttcatttggtaagaatctggattactacggtggaggagggaat
agtggtagtggatatggagttccttctagcaattatggtggaggatatgctcccggggtg
gcaagtgcttgggattag
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