Gossypium hirsutum (upland cotton): 107948284
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Entry
107948284 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107948284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107948284
03012 Translation factors [BR:
ghi03012
]
107948284
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107948284
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107948284
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107948284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
ATPase
Rad17
AAA_19
Motif
Other DBs
NCBI-GeneID:
107948284
NCBI-ProteinID:
XP_016738265
UniProt:
A0A1U8NH19
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All DBs
Position
A04:complement(17737231..17746622)
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AA seq
1056 aa
AA seq
DB search
MPLRLLSINNKLTSLLFNRPFPAPTPIFPFSPLQISSFAMSYRPNYQGGRRGGGPNSGRG
GGRRGGGGGGRGGRGGEQRWWDPAWRAERLRQKAAEMEILDEAEWWDKMNQMKKGQEQEM
IIKRNFSRSDQQVLSDMAYELGLYFHAYNKGKALVVSKVPLPNYRVDLDEHHGSTQKQIQ
MSTETERRVGNLLDVSRDTKLGDDSGVASSRGTTKPLPDVKRIDSVSTIETDSSKEKFSA
ELKKKQENLNASNSVKAMLSFREKLPAFKVKAEFLKAVAQNQVLVVSGETGCGKTTQLPQ
FILEEEISSLRGANCNIICTQPRRISAISVAARISSERGENVGETVGYQIRLESKRSSQT
RLLFCTTGVLLRQLVQDPYLNGVSHLLVDEIHERGMNEDFLLIILLDLLPRRPDLRLILM
SATINADLFSKYFGNAPTIHIPGLTFPVAELFLEDVLQKTRYNIKSEFDNNQGNSRRRRK
ELDFKKDNLTALYEDVDIDSEYKNYSASTRHSLEAWSGSQIDLGLVEATILYICRHEADG
AILVFLTGWDDISKLLDKIKVNSFLGDLSKFLVLPLHGSMPTINQREIFDRPPPDKRKIV
LATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP
GVCYRLYPKLIHDAMLEYQLPEILRTPLQELCVHIKSLQLGSVGSFLAKALQPPDPLSVE
NAIELLKTIGALGDAEELTPLGRHLCTLPLDPNIGKMLLMGAIFQCLNPALTIAAALAHR
DPFVLPINRKEEADAAKRSFAGDSCSDHIALVKAFEGYKDAKRNGRERAFCWENFLSPVT
LQMMEDMRNQFIDLLSDIGFVDKSRGASAYNQYSHDLEMVCAVLCAGLYPNVVQCKRRGK
RTAFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIFVRDSTNISDYALLLFGG
NLIPSKTGEGIEMLGGYLHFSASKSVLDLIRKLRGELDKLLNRKVEEPGFDISVEGKGVV
SAVVELLHSQNPAFLPFGIQISPGPAETLGELDRSI
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgcgcttgcttagcattaataataagctcacttcgcttcttttcaatcgcccc
ttccccgcccctacgccgatctttcctttttctccactccagatttcatctttcgctatg
tcttatcgccctaactaccaaggtggccgtcgaggcgggggtcccaactccggccgcgga
ggtgggcgccgaggaggcggcggcggaggacgcggaggacgaggcggtgaacagcgctgg
tgggacccggcttggcgcgctgagcgtctccgtcaaaaggccgctgagatggaaattctg
gatgaggctgagtggtgggataagatgaatcaaatgaaaaaaggacaggagcaagagatg
atcattaaacgaaatttcagccgttcagaccagcaagttctctctgatatggcttacgaa
ttaggtctttacttccatgcgtataataaagggaaggctcttgtggttagtaaagttcca
ttgccaaattatcgtgtagatcttgatgaacatcatggatcaacacaaaaacagattcaa
atgtctacagaaaccgagaggcgagtgggaaatctcttggatgtctcaagggacacaaag
ttgggtgatgattcaggagtggcatctagtaggggaaccacaaaaccattgcctgatgta
aaaagaattgattcagtttctacaattgaaacagattcttccaaggaaaaattcagtgct
gaactcaagaaaaagcaggaaaacttgaacgcaagtaacagtgtgaaggcgatgctgtct
ttcagagaaaaactaccagcattcaaagtgaaagctgagtttctaaaagctgttgctcaa
aatcaggttctagtggtttcaggagaaacaggatgtggtaaaacaacacagcttcctcaa
tttattttagaagaggagatatcatctctgaggggtgctaattgtaatataatatgtact
cagccacgtcgcatatctgccatatctgttgcagcgagaatatcctcagaaaggggagag
aatgttggtgaaactgttggttatcagattcgcctagagtcaaagcgatcttctcagaca
cggctgttgttttgcacaactggagtgttactcagacagttggttcaggacccatattta
aatggcgtgagtcatttgctagtggatgaaattcatgaaagaggcatgaatgaggacttc
ctgttaataattttacttgaccttcttcctcggcgtccagacttgcgtcttattttgatg
agtgcaaccatcaatgctgatttgttctctaaatattttggaaatgctccaactattcac
ataccggggttgacctttccagtggctgagttatttctcgaggatgtgctgcagaaaact
cgttataatatcaaatcagaatttgacaataatcaaggcaattcgcgaaggaggaggaaa
gagcttgatttcaagaaagataatttaactgcactatatgaggatgttgacattgattct
gaatataagaattacagtgcatctacaagacattcacttgaagcgtggtcaggctcacag
attgatttgggtctggtggaggccacaattttgtatatttgccgccatgaagctgatgga
gctattcttgtattcctcacaggctgggatgacatttctaagctccttgacaagattaaa
gtgaacagctttcttggggatcttagcaagtttctggttcttcccttacatggttctatg
cctaccattaatcaacgagaaatatttgaccgtcctccacctgacaagcgaaaaattgtt
ttggcgacaaatattgctgaaagtagcatcaccatagatgatgttgtgtatgttatagac
tgtggaaaggcaaaggaaacaagttatgatgctcttaacaagctggcatgtcttttacct
tcatggatttcaaaggcttcagcacatcagagacgaggccgtgctggtcgtgtgcaacct
ggagtttgctataggctgtacccaaaattgatccatgatgcaatgcttgagtatcaatta
cctgaaattctccgaacaccattgcaagagctatgcgtacatatcaaaagcttgcagctt
ggatccgtgggatcatttttggcaaaggcacttcagcctccagatcctctttctgttgaa
aatgcaattgagcttcttaaaacaattggagctttgggtgatgcagaggagcttactcct
cttggtcgtcatctttgcactctacctttggacccaaacataggaaagatgcttctaatg
ggggctatttttcaatgcctgaatcctgctttgacaattgcagctgctcttgctcatcgt
gacccatttgtccttccaataaataggaaagaggaagctgatgcagcaaaaagatccttt
gctggtgattcttgcagtgaccatatagcccttgttaaagcctttgaaggatataaagat
gcaaagcgtaatggaagagagagagcattttgttgggaaaattttctatccccagtgacc
ttgcagatgatggaggatatgagaaatcagtttatagatctgttatcagacataggcttt
gtagacaaatcacggggtgctagcgcttacaaccaatacagccatgatttggagatggta
tgtgcagtcctttgtgctgggctttacccaaatgttgtgcaatgcaaaagaagaggaaaa
cgtacagcattctacactaaagaagtcggaaaagttgacattcatcctgcatctgttaac
gcgggggttcatctctttccattgccttatatggtttacagtgaaaaggtcaaaacaacc
agcatttttgtccgagactcaacaaatatttctgattacgctttacttctgtttggtggt
aatcttattcctagcaaaacgggagagggtattgagatgcttggggggtaccttcatttt
tctgcgtcgaagagtgtactggacttgatacggaaactgcgtggggaacttgacaagctt
ttgaacagaaaggttgaagaacctggatttgatatatctgttgaaggaaagggagtagtg
tctgctgtggttgagttattgcacagccaaaatcctgctttcttgccttttggcatccaa
atatcacctgggcctgctgaaactttgggagagcttgacagatcaatctga
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