Gossypium hirsutum (upland cotton): 107948335
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Entry
107948335 CDS
T04793
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107948335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107948335
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
107948335
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
HECT type E3
107948335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
Motif
Other DBs
NCBI-GeneID:
107948335
NCBI-ProteinID:
XP_016674696
UniProt:
A0A1U8I8W8
LinkDB
All DBs
Position
A04:complement(69136159..69144194)
Genome browser
AA seq
1570 aa
AA seq
DB search
MGSRGQKRTETADELPADKRACSSLDFRPSSSNCSSVRTHLNLPNSTPDADMETSSSTSA
SSRSDGEHEKEDESAYGSCDSDDAEQQPRHHILRDYQRRRSSSDHGKLNTILSNLNEGNG
GSGQLAALTELCEVLSFCNEDSLSSLMADSLSPVLVNLAKNESNANIMLLAIRGMTYLCD
VYPRSSGFLVRHDAVPALCERLLAIEYVDVAEQCLQALEKISCDQPVACLQAGAIMAVLN
FIDFFSISVQRVALATVVNICKKLPLEGPAPFVEAVPKLCDLLQHEDQQLVESVATCLIK
ISERMCQSFELMEELCKHELINQVTLVMKSNSRTTISQPIYNGLIGLLVKLSSGSFVAFR
SLYELNISNILKDVLSTYDLSHGISPPDLVDGNCNQVHEVLKLLNELLPTSTGDQANQVV
LDKESFLADHHDLLQRFGMDLFPMLVQVVNSGANIYVCYGCLSVISKLVFLSKPDMLGEL
LKTANIPSFLAGVFTRKDHHLLMLALQIAEIILKKLSDVFLSSFIKEGVFYVIDALLMPE
KCSQLMLPVFGGIQPSFDSSQKSSVREFQRCLCYAFDMVPSSSVSSCKIDKDTVCNLAKH
IKTNYFAPELIESDKGMTDVLQNLRTLSAALSNLINMPVDDDTTVHHEEKFYSILHQIML
KLNGREPVSTFEFIESGIVKSLMHYLSDGLHMRGNVEFTGSYDHLVVLGKRFEVFTKLFF
SYSDILVEDLPLSILIQKLQSGLSTLENFPVIPSHGFKQRNSFATVPNGRCVMYPCFRVR
FARAEGENCLSDCAEDVLAVDPFSSLDAIEGYLWPKVFTERTEYGELDAEELEHREVLPN
LLSSNANSTQGESSGFIDSMSIDLPEMQEDEANFSQIASEQVHFRELNSGETMSLDETNM
GSAGKEQEFPTESTKNMRTPCSAAGDNDIKDSSARLLLYLEGHQLDRTLTLYQVILQQLL
NSEKEFMTWAKLWSRVYTITYKRALESNQDDPQEHTYKERKFSVSDQKIASIQNMGFFAS
MFACKLTSDLDKSSPIYDILFLLKLLEGINKYSFHLMSCERVRAFAEGRNDNLDNLKVMV
RSVSQNEFVSSRLTGKLEQQMQDAFTLSTGGMPSWCNDLVSSCPFLFSFEARCKYFRLAA
FGPRRGQLNAISRSNSGASSDRQTTSGGLPRKKFLVSRDQILDSATRMMDLHAHHKGLLE
VEYNEEVGTGLGPTLEFYTLVSHEFQKFGLGMWRGDHCSFITSTTLPTESVILRNGSGLF
PRPCSPKSDANNGIQFSQVLKKFVLLGQIVAKAIQDGRVLDVSFSKAFYKLILGQDLSLY
DIQSFDPELGRTLLEFQAIIVNQKRHQKSICVENTALKQDLCFRNTRIEDLFLDFTLPGY
PDYVLSSECNLKMVNSANLEEYLELIVDATIHSGIARQVEAFKSGFNQVFSISHLHIFTE
AELERLLCGECDIWAFNELLEHIKFDHGYTASSPPIVNLLEIIQEFEYSQRRAFLQFVTG
APRLPPGGLASLNPKLTIVRKHSSNCADTELPSVMTCANYLKLPPYSSKEKMKEKLLYAI
SEGQGSFHLS
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtcgagggcagaaacgaacggaaacagccgacgaattaccagcagataagcga
gcttgtagttcattagattttcgaccaagttcctctaactgttcctcagtcagaactcac
ctcaatttaccaaattccactcccgatgctgacatggaaacttcctcctccacctcggct
tcgagccgatcggatggtgaacacgagaaggaagacgaatcagcttatggatcatgcgat
tctgacgatgctgagcaacaaccacggcaccacattttaagagactatcagagaagaaga
tcgtcgagtgatcatggaaaattgaatactattttgtcaaatttgaacgaaggaaatgga
ggttcgggccaactggctgcgttgactgaactttgtgaagtgttgtctttttgtaatgag
gattcgctttcgagtttgatggcggattctttatcaccagtacttgtaaatcttgcgaag
aacgagagtaatgctaatataatgttgttggcaattaggggtatgacttatctatgtgat
gtatatcctagatcatctggtttccttgttagacacgatgcagttcctgctctttgtgaa
agattattggctattgaatatgtggatgtagctgagcagtgtttgcaagcattggagaaa
atatcttgcgatcaaccagttgcttgtttacaagctggtgcaattatggctgttctaaat
tttattgattttttctcaattagtgtgcagagagttgcacttgccacggtggtgaacatt
tgtaagaaacttcctttggagggtcctgcaccttttgttgaagcggttcccaaattatgt
gatttacttcagcatgaggaccaacagcttgttgaaagtgttgcaacttgcttgatcaaa
atatctgagagaatgtgtcagtcttttgagctgatggaggaactctgtaagcatgagctg
attaatcaagtcacacttgttatgaaatcgaatagccgaactactatatcccagccaata
tacaatggcttgataggattacttgtcaagctttcttcgggttcatttgtagcttttaga
agtctgtatgagctaaatataagcaacatactgaaggatgtcttatctacttatgacctc
tcacatggaatatctcctccggacttagttgatggcaattgcaatcaggtacatgaagtt
ctgaaattgctcaatgagctgcttcccacctccaccggagatcaagctaatcaggtagtg
ttggataaggaatcatttttagctgaccatcatgatcttctgcaaagatttggaatggat
ttatttcccatgctggtccaggtagtcaattctggtgcaaacatatatgtttgttatggc
tgcctctctgtcatcagcaagttagtttttctgagcaaacctgacatgcttggtgaattg
cttaagactgccaacattccaagtttcctggctggagtgtttactcggaaggatcaccat
ttgctgatgttagccctacagattgctgagatcatcctcaaaaagctttctgatgttttt
ttgagctcattcataaaggagggtgttttttatgtgatagacgcacttctaatgcctgaa
aaatgctcgcaattgatgcttccggtgtttggtggtatccaaccatcatttgattcaagc
caaaagtcttctgtgagggagttccagagatgcttgtgttatgcatttgatatggtgcca
tcttcttcagtctcatcttgtaagattgacaaggatactgtttgcaatcttgcaaaacat
attaaaaccaattactttgctccagaattaattgaatccgacaaagggatgactgatgtt
cttcaaaatctcagaaccttgtctgctgccttgagtaatttgataaacatgcctgttgat
gatgatactactgttcatcatgaagagaagttctacagcatattacatcaaattatgctg
aagcttaatggtagagaacctgtttctacttttgaatttattgaaagtggaatcgtgaaa
tcgcttatgcattacctatctgatgggctgcacatgagagggaatgtggaatttactggc
agttatgatcatttggttgttctggggaagagatttgaggtgttcacaaagttgtttttt
tcttattcagatatccttgtcgaggacttgcctctctctatactaatacaaaaattacag
agtggattgtcaactttggaaaatttccctgttattccaagccatggattcaagcagaga
aattcatttgctactgtcccaaatggacgttgtgttatgtatccatgttttagggttcgt
tttgcgagggcggaaggggagaactgcctatctgattgcgctgaagatgttttggctgtt
gaccctttttcttccttagatgccattgaaggatatctttggcccaaagtttttactgaa
agaacagaatatggggaattagatgctgaagagttggaacacagagaagttctgcctaat
cttttatcatcgaatgcaaactctactcaaggcgagagttcaggttttatagacagcatg
tccattgacttgccagagatgcaggaagatgaagctaacttttcacagattgcatctgaa
caagttcatttcagagaattgaattctggtgaaacaatgtctttggatgaaaccaatatg
ggctctgctgggaaggaacaagagtttcctacagagtcaactaaaaatatgagaactccc
tgttctgcagctggtgacaatgacattaaagattcctcagctagactattgctttatcta
gaaggacatcaactagaccgaactttgacgctatatcaagtgattcttcaacagctacta
aattcagagaaagaatttatgacatgggcaaagttatggagtcgagtatacacaataaca
tacaaaagagctctagaatctaaccaagatgatcctcaagaacatacatataaagaacga
aagttctcagtatcagatcaaaagattgcctctattcagaatatgggattttttgccagc
atgtttgcttgcaaactcacttctgatttggataagtcaagtcctatttatgatatattg
tttctgcttaaacttttggaaggcatcaacaaatattcatttcatctgatgtcttgtgag
agagttcgtgcatttgctgaaggtaggaatgataacttggataatttgaaggtaatggtt
cgttcagtgtctcaaaatgaatttgtgagcagtagattgacaggaaagctagaacagcag
atgcaggatgctttcaccttatccaccggtggtatgccttcatggtgtaacgatttagtt
tcttcttgtccctttctgtttagctttgaggcaagatgcaagtacttccgtttggctgct
tttggtccacgaagaggtcaactcaatgccatttcacgtagtaattcaggcgcttcaagt
gacaggcaaactacttcaggtggtttgcctcgtaagaaatttttagtctcacgtgatcaa
attctagattctgcaaccagaatgatggacctacatgctcatcataagggacttcttgag
gtggagtataatgaagaagttggcactggtctcggtccaactttggaattctatactctt
gttagtcatgaatttcagaaatttggccttggcatgtggagaggggatcattgttctttt
atcacttcaactaccttgcctacagaatctgtaattctgagaaacggttctgggcttttc
cctcgtccatgttcacctaaatctgatgcgaataatggaatacagttttctcaagtacta
aaaaaatttgttcttttgggtcaaattgtcgcaaaggctattcaagatggaagagtactt
gatgtttccttctccaaagccttctacaaattaattttggggcaggaccttagtttgtat
gatatccaatctttcgatcctgagcttggtaggacgctactggagtttcaggctattatt
gttaatcagaaaaggcatcagaaatccatttgtgttgaaaacacagcattgaaacaggat
ttgtgctttcgaaataccaggattgaggacctttttctggactttacccttcctggttat
cctgattatgttctttcttctgagtgtaatctcaaaatggtaaattctgccaatttggag
gaatatcttgagcttattgtggatgctaccatacatagtggaattgccagacaagttgaa
gctttcaagtctggatttaatcaggttttttcaattagccatctccatatttttacggag
gcggaactagagcgtttactctgtggagaatgtgatatctgggctttcaatgaacttctg
gaacatatcaagtttgatcatggatatacggctagcagtccaccaatcgttaatcttctg
gaaattatacaagaatttgaatattcacaaaggcgagcatttctgcagtttgtgactggt
gctccccggctacctccaggaggtttggcgtctttaaatccaaaattgacaattgttcgc
aagcatagtagcaattgtgctgatacggagctgcccagtgttatgacttgtgccaattac
ctgaagttgcctccttattcttcaaaagagaagatgaaagagaagctattatatgccata
agtgaagggcaaggctcattccacctttcgtag
DBGET
integrated database retrieval system
