Gossypium hirsutum (upland cotton): 107948535
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Entry
107948535 CDS
T04793
Name
(RefSeq) DNA polymerase lambda isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03410
Base excision repair
ghi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107948535
03450 Non-homologous end-joining
107948535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107948535
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
107948535
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
107948535
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
107948535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
HHH_8
DNA_pol_B_thumb
HHH_5
BRCT
NTP_transf_2
Cdd1
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
107948535
NCBI-ProteinID:
XP_016738607
UniProt:
A0A1U8NHM3
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Position
D01:complement(39958225..39976290)
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AA seq
526 aa
AA seq
DB search
MAPKRTKRKSPSPDPQGMFAGMTVFLIEDGVQSLRLQIWKQKLVQMGAKVETQLSEKVSH
VFAISSDALFHHVDDDRLARFKGHVLLYQWLEESLAAGEKVSEDFYILKVDPEGFDIFDK
SLKAKLANRNSSSYDEHSHCKRIKSSHEEKKQTNEEKKGDIETNSVSWASNTEPHFPSSL
TNSPEISSTQDKDVGMQMSFQYSPPDLNKGITEIFGKLVNIYRALGDDRRSFSYYKAIAV
VEKLPFKVESADQVKDLPGIGKSMQDHIQEIVTTGKLSKLEQFETDEKVKTITLFGEVWG
IGPATALKLYEKGHRTLDDLKNEDSLTNAQVIGLKYFDDIKTRIPRHEAQEMELVLQKVA
EDIIPGMVVVCGGSYRRGKASCGDLDIVITHPDGKSHKGFLQNYVKRLKEMKLLREDLIF
STHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKAYPRDIYAFGLIAWTGNDVLNRRLRLL
AESKGYRLDDTGFKRYRKSEIGDRRRCLIFWDFHGLNLMKGICKEA
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggcacccaagcgaaccaaaagaaagtctccatcccccgatccacaaggaatgttcgcc
ggtatgacggttttcttaatcgaagatggcgtccagtctcttcgtttacagatttggaag
caaaagctggtacaaatgggagctaaggttgagactcagttgtccgaaaaagtcagtcat
gtttttgctatcagctcagatgctctttttcaccacgtcgatgacgaccgattggctcgc
ttcaaagggcatgttcttttgtatcagtggttggaggaaagcttggcagctggtgaaaag
gtttctgaggatttctacattctgaaagtggatcctgaagggttcgatatatttgacaag
agtttgaaggctaaactagccaacaggaattcttccagctatgatgaacattcacattgc
aaaagaatcaaatcctcacatgaggagaaaaaacaaactaatgaagaaaagaaaggggat
atagaaactaactctgtatcttgggcatcaaatactgagccccactttcccagctcccta
actaacagtcctgaaatctctagtactcaagataaggatgttggcatgcaaatgtctttt
cagtacagtccgccagatttaaacaagggcattacagagatatttgggaaacttgtcaac
atatatagagcgctgggtgatgaccgaagatcatttagctactacaaggctattgcagtt
gttgagaagttgccctttaaagttgaaagtgcagatcaggtaaaagatctgcctggaatt
ggaaagtcaatgcaagatcatattcaggagatagtgactaccggaaagttatcaaagttg
gagcaatttgaaactgatgagaaggtaaagacaataactttatttggtgaagtttgggga
attggtccagctacagccctaaaattatatgagaaaggacatcgtacattagatgatttg
aagaatgaagattctttaacaaatgctcaagtgataggattgaaatattttgatgatatt
aagacaaggatcccacggcatgaggctcaagagatggaattagttttacagaaagtagca
gaagatatcatacctgggatggttgttgtatgtgggggatcatatagacgtggaaaagct
tcctgtggagatttagacattgtaattacacatcctgatggaaaaagccataaaggtttc
ctgcaaaattatgtcaagcggttaaaagagatgaagttattaagggaagatttgattttt
agtacccatagtgaagagggtactgattcaggtgttgatacatattttggtctttgcact
tatcctggacgagagctcaggcaccgcatagactttaaggcatatccgagggacatatat
gcatttggactaatagcatggactgggaatgatgtgttaaatagaaggttgagactgcta
gcagaatctaaaggatatagacttgatgatacagggttcaagaggtaccgcaagtctgaa
attggagacagaaggaggtgtttgattttctgggatttccatggcttgaaccttatgaaa
ggaatctgtaaagaagcgtag
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