Gossypium hirsutum (upland cotton): 107948942
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Entry
107948942 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107948942 isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107948942
Membrane trafficking [BR:
ghi04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
107948942
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
107948942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
ANAPC4_WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
WDR55
Synaptobrevin
Lgl_C
PEP5_VPS11_N
Beta-prop_IFT140_1st
ABC_tran_Xtn
Motif
Other DBs
NCBI-GeneID:
107948942
NCBI-ProteinID:
XP_016739101
UniProt:
A0A1U8NJB6
LinkDB
All DBs
Position
A04:complement(77447837..77455544)
Genome browser
AA seq
1094 aa
AA seq
DB search
MFAKRLLQKSVHHSQQNVQRGDLKSEDLDLRVAIHYGIPSTASILAFDPIQRLLAIGTLD
GRIKVIGGDGIEGLLISPKQLPYKYLEFIQNQGFLIGISNDNDIQVWNLETRHLACCLQW
ESNITAFCLIGGSHFMYIGDEYGILSVVKYDGEDGKLSHLPYNISANSLSEAAGFSFPDD
QPIVGILPQPHSSGDRVIIAYANGLIILWDVSKSQIPFIGGGKDLQLKDAVDSDVQDDTF
EHHLQEKEISAICWASSDGSILAVGYVDGDILFWNTSITSSKGERNGQNKNVVKLQLSSA
ERKLPVIVLQWSSNNTSRNDYNGKLFIYGGDEIGSEEVLTVLSLEWSSGMETVRCVGRVD
LTLTGSFADMTLLPSAGATGGNHKADLFVLTNPGQLHLYDGTNLSTLLSEKERKQFAHPV
EFPMVIPTADPSMTVGKFSALPAGGISSKCLSELASITKPCSTPTPAAGIKWPLTGGVPT
QLAVSKDNSIDRLYIAGYQDGSVRIWDASYPILTLLFVLEGEVQGTNVAHSSVPVTTLNF
CWHTLNLAVGNECGVVSIYYLGRSDKTSFHYVTETKCEVQSFTQGKGPQRKAVFSLLKSP
VQALHFGNCGAKLTIGFEFGRVAMLDVSSPSILFLTDCVSSSSSPIISLSWLEFKNVHRH
VKSSEHSETDVAIKPEEQIIFILTKDAKIISINGANGEMIQPHPWHLKKEETALSMYIIE
NSLPLSILNCEKRSEESNKDTTAKIEAELDASSTEHPSSPEAASSLEHSLDTLVLLCCEN
SLRLYSMKSMIQGKDRTIHKVNHTRPCCWTTTFKKDGRVCGLLLLFQTGDLEIRSLPDLE
LVKESSIKSILRWNYKANMDKLMTSDNAQVALTSRCEMAFISLLAGANDFRIPESLPCLH
DRVLAAAADAALSFSSNQKMKQVMAPGILGGIVKGFKGGKVNTSAMPESNFTHLESKFSK
TPFIDTSQNVNKHEEMELDIDDIEIDDTPPVTSSSSHEAVKTKGGKETDREKLLGAADDS
TPRVRTAQEIIAKYRKTGDASSAAAHARNKLVERQEKLERISRRTEELQSGAENFASLAD
ELVKAMENRKWWQI
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgttcgctaaacgcctgcttcagaaatcggttcatcattcccagcaaaatgtgcagcgt
ggggatttgaaatcagaagatttggatttgcgagttgctattcactatgggatcccatct
actgcatcaattcttgcttttgatcctattcagcgcctcttggctatcgggactttagat
ggacggattaaagttattgggggtgatggaattgagggacttctcatatctccgaagcaa
ttgccttacaaatatttagagttcatacaaaaccagggttttttgattggtatctcaaat
gacaatgatattcaggtctggaatctggagaccaggcatctagcatgctgcttacagtgg
gagtccaacattactgccttctgtctcattggtggctcacatttcatgtacattggagat
gagtatgggatactatcagtggttaagtatgatggtgaagatggaaaactttcgcactta
ccctataatatatcagcaaattctttaagtgaagcagctggattttcatttcctgatgac
caacctattgttgggattcttcctcaaccccattcttctggagatagggtcataattgca
tatgcaaatggtttgataattctttgggatgtttctaaatctcaaattccctttattgga
ggtggaaaggatcttcaattaaaggatgcagtggattcagatgttcaagatgatacattt
gagcatcatctccaagaaaaggaaataagtgctatttgttgggcatcttctgatggatcc
attctcgcagtgggatacgtagatggggatatcttgttttggaatacaagtattacctct
tctaaaggtgaaagaaatggacaaaacaaaaatgttgttaagctgcaattgtcatccgct
gagaggaaacttcctgtcattgtgttacaatggtcctcaaataatacatcacgcaatgat
tataatggcaaactttttatctatggtggtgatgagataggatctgaagaagttctgaca
gttttgagtcttgaatggtcatctgggatggagactgttagatgtgttggtcgtgtggac
cttacattgactggctctttcgctgacatgactttgttgccaagtgctggggcaacaggg
ggaaatcacaaagctgatctttttgtgttgacaaaccctggacaactgcatctttatgat
ggtacaaacttgtctaccttgctatctgagaaagagaggaaacaatttgcccatccagtg
gaatttcccatggttatacctacagctgacccatcaatgactgttggaaagttcagcgcc
ctacctgctggtggaatttcatcaaaatgtctttcagagcttgcatcaataacgaaacct
tgctcaacaccaacccctgctgctggcataaagtggcccttgacaggcggtgtacccact
caactagctgtctctaaggataacagtattgatagattgtacatagcaggttaccaggat
ggttcggtccggatctgggatgcttcttatcctatactgactcttctctttgttcttgaa
ggagaagtgcaaggcacaaacgtggctcattctagtgttccagttacaactctgaacttc
tgttggcacactttgaatttggctgttggaaatgaatgcggtgtggtaagcatttattac
cttggcaggtctgataaaacaagctttcactatgtcacggagaccaaatgtgaagttcag
agttttacgcaaggaaaaggacctcagcgtaaagctgtattttcccttcttaaatcacca
gttcaagccctgcattttgggaattgtggagccaagcttaccattggatttgaatttggt
cgcgttgcgatgcttgatgtgagttcgccatcaattttgtttctcaccgactgtgtatct
agttcatcatctccgatcatttcattgtcttggctagagtttaaaaatgttcatagacat
gtcaaaagctctgagcattcagaaacagatgttgcaatcaaacctgaagagcaaataata
tttatattaaccaaggatgcaaaaataatctctattaacggtgctaatggtgagatgata
caacctcatccatggcacttgaaaaaagaagaaactgcactctccatgtacattatagag
aacagtcttccattatccatattaaactgtgagaagaggtctgaggaatccaacaaggat
accactgccaagattgaggctgagcttgatgcttcttcaactgagcatccctcctctcca
gaagctgcatcctctctggaacactcacttgatacacttgtgttgctttgttgtgaaaat
tccttgcggttgtactctatgaagtctatgattcagggcaaggatagaacaattcataaa
gtaaaccatacgagaccttgctgttggaccaccacttttaagaaagatggaagagtttgt
ggacttctattgctgtttcaaacaggggatctggagatcagatccttgccagacttggaa
ttggttaaagaaagctccataaagtcaatcctaaggtggaactacaaggcaaatatggat
aagttgatgacttctgataatgctcaagttgcactgacgagcagatgtgaaatggcattc
atctctctcttggctggtgcaaatgatttcaggattccggaatctctgccttgtctccac
gatagggttcttgcagcagctgccgatgctgccttaagtttctcttcaaaccagaagatg
aaacaggttatggcaccagggattcttggtggtatagtcaaaggctttaaaggaggaaaa
gtgaatacatctgcaatgcctgaatccaattttactcatttggagagcaaattttcaaag
acccccttcatagacacaagccagaatgttaataagcatgaagagatggagcttgacata
gatgacatcgaaatagatgacactccacctgtaactagctcctcatctcatgaagctgtt
aaaacgaaaggaggaaaagaaacagacagggaaaaactgctaggtgcagcagatgattca
acacccagggttagaacagctcaagaaattattgcaaaatatagaaaaactggggatgcc
tcttcagcagcagcgcatgcgagaaataaactggtagaaagacaggaaaagctggagaga
atcagcagacgcaccgaagagctgcagagcggggcagaaaactttgcgtcattggcagat
gaacttgtgaaggcaatggaaaatcgaaagtggtggcaaatataa
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integrated database retrieval system
