Gossypium hirsutum (upland cotton): 107948956
Help
Entry
107948956 CDS
T04793
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107948956
03460 Fanconi anemia pathway
107948956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107948956
03036 Chromosome and associated proteins [BR:
ghi03036
]
107948956
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107948956
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
107948956
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
107948956
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
107948956
FA (Fanconi anemia) pathway
Downstream FA components
107948956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Tower
Motif
Other DBs
NCBI-GeneID:
107948956
NCBI-ProteinID:
XP_016739123
UniProt:
A0A1U8NM58
LinkDB
All DBs
Position
A04:complement(78762799..78769829)
Genome browser
AA seq
1106 aa
AA seq
DB search
MSTWQIFSHAGTSFRWEASPPIVPIKPADDPNGAPVPPLPSMADLLLQGCSKLIENGDGE
FEKYPMFRTGLGKSVALKESSIAKALSILANDDAASTVTSSKLIPANNGCGNSLFQTGSG
KMVNISSAGLVRAKTFLGLEQDNENHNFEGFQHPRRLPATNEPYDCQRFSHSGKKEDLQN
YGVMDVTSEPRHMLNSRNRLLGGELGSENDSTPMHSKMFDSVPKPPPIKFHTAGGRSLSV
SSDALKRARSLLGDPELGNFFGEMDQEVPPFTVYKEENFNDASLNKENCFFTSFPVSKDT
SKDFTSPLKSSFKQTRSIFNSENLSFGSNLIEKFDAVESSSACASAINMPSPQNALKSIN
RLSEKNFATNNSLPSGSGSQTNLPRRSFGGPLVDISNNIATSQTNNKQVMNEKRRIGRSS
FVSPFKRPRCSKISAPLNNDVSLVANDDHTCCKRTVSTKYPFQVPRVYIKEYFAVPPSAC
STLKCFPIKGKQITPENAYEYLFKDETGLCRIGAETFYDMLSHSGASVQHVSKEWVANHY
KWIVWKLACYERCYPSKCAGKFLTVSNVLEELKYRYEREVNHGQRSAIKKILEGDASPSK
MLVLCVSTIQSNSEPNMETNLEITNGTHNSGNAKVELTDGWYSINAILDVLLSKQLAVGK
LFVGQKLRIWGAGLCGWVGPVSPLEASSAISLALNLNGTCRAHWADRLGFCKGFRIPMAF
RCIKGDGGPVPLTLVGVTRIYPVLYRERLRNGGSIVRSERMESRMVQKHNQRCSVLVDHV
ISEYQRRVNSSHIHNDSESEGAKILRILETSAEPEVLMAEMSPEQLTSFATYKSKLEATR
QLEMEKSIEKALAEAGLNERDVVPFMRVRVVGLINRNYHGKGRPKEGIITIWNPTEKQEC
ELVEGQAYVVSGLIPMNSDSEILYLQARGSTNKWQPLSPLAMESFEAFFCPRKSIKLSNL
GEISLSSEFDIAAYVVYVGEVYTASHQKKQWVFVTDDSISDLQSDSLLAISFCSPSIDDD
SFAPINPNLVGSMVGFCNLIKKPKDQMNYLWVAEATENSTYYLNFKPSISHLQSAGASVQ
AWAKASSSIIDELRKKVLFVIGNCEG
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgtggcagattttttctcatgccggaacaagttttcgctgggaggcttcccct
cctatcgtaccgattaagcctgccgatgacccgaacggagctccggttcctccactccca
tccatggccgatctcctgcttcaaggatgttcgaagcttattgagaatggagatggagaa
ttcgagaaatatccgatgttcagaaccggattggggaaatcggtggcattgaaagaatct
tcaattgcaaaagcattatctatcctcgccaacgacgacgctgcctctactgttacttca
agcaaactgattccagcgaacaatggctgcggtaactctctttttcaaacgggctctggg
aaaatggttaacatatcttcagctggtctggtcagagctaagacatttttgggacttgaa
caagataatgagaatcacaattttgaaggttttcaacatccaaggaggttacctgcaact
aatgaaccttatgactgccaaaggttttctcattcagggaagaaagaagatttgcaaaat
tatggggttatggatgttacatcagaaccaaggcacatgttaaactctaggaatcgttta
ctaggaggtgaactaggcagtgaaaatgactcaactccaatgcattccaaaatgtttgat
tcagttcccaaaccacctccaatcaagtttcatactgcaggtggaagatcattgtcagtt
tcaagtgatgcattgaagcgtgcaaggagtcttcttggtgacccagagctaggaaatttc
ttcggtgaaatggatcaagaggttccaccatttacagtttacaaggaggaaaattttaat
gatgcttcattaaacaaggaaaactgtttctttacttcatttccagtaagtaaagacaca
tccaaggatttcacatccccactgaaatcatctttcaagcaaacgaggtccatattcaat
tcagaaaatttaagttttgggagtaatttgattgaaaaatttgatgcagttgaaagttct
agtgcatgtgcatcggccatcaatatgccttctccacagaatgctttgaaatcaatcaat
aggctttctgagaaaaattttgcaactaacaattctttgcctagcggttctggttcacag
actaatttgcctagaaggtcatttggtgggccattggttgatatttcaaataacattgct
acatctcaaacaaataacaaacaggttatgaatgaaaagaggagaattggaagatcaagt
tttgtttctcccttcaaaagaccccgctgttccaagatctctgctccattgaataatgat
gtttccttggtagcaaatgatgatcatacatgttgcaaaagaacagtttccactaaatat
ccttttcaagtaccaagagtatatataaaggaatattttgctgtgcctccttcagcctgc
agcacgttgaagtgtttcccaatcaaaggtaaacagatcacaccagagaatgcttatgag
tatttgtttaaagatgaaactggcttatgtcgaattggggcagaaactttttatgacatg
ttgtctcattctggagcttctgtgcaacacgtttctaaagagtgggtcgcaaatcattat
aagtggattgtttggaaacttgcatgctacgagaggtgctatccttccaaatgtgctgga
aaatttttgacggtctccaatgtacttgaggaattaaagtacagatatgagagggaagtc
aatcatggtcagcgttctgcaataaagaaaatacttgaaggggatgcttcgccttctaaa
atgttggtgctatgtgtttcaacaattcaatcaaattctgaaccaaatatggagaccaac
ctagagataacaaatggaactcataatagtggcaatgcaaaagtggaactaacagatggg
tggtactctataaatgctattttggatgtattgctatcaaagcagcttgctgttggaaaa
ttgtttgtgggacagaagctccggatctggggagcaggactttgtggctgggttgggcca
gtttcaccccttgaggcgtccagtgcaattagtttagctttgaacctgaacgggacgtgt
agagctcactgggctgatcgacttggattttgtaaaggttttcgtattcctatggcattt
aggtgtatcaagggtgacgggggtccagtccctttgactttagttggagtcactcggata
taccctgttctctacagggaaaggttgagaaatgggggatcaattgttagatctgagagg
atggagagtagaatggtgcaaaagcacaatcaaaggtgctcagttctggtagatcatgtt
atatctgagtatcaaagaagggtcaatagttctcatatccataatgacagtgagagtgaa
ggagcgaaaatcttaaggattcttgagacatctgctgagccagaagtccttatggcagaa
atgagcccggagcaactaacttcctttgctacatataaatcaaaacttgaggctactagg
cagctagagatggagaaatcaattgagaaagctctggcggaggctggattaaatgagcga
gatgttgttccattcatgagggttagagttgttggattaattaataggaattatcatgga
aagggaagacctaaagaaggaataataaccatttggaatccaacagaaaagcaggaatgt
gagctggttgagggacaggcatatgtcgtttctggacttataccaatgaactcagattcg
gaaatcctttacttacaagcccgaggatctaccaacaaatggcagcccctatctcccctg
gcaatggaaagttttgaggcatttttctgcccacgaaagtcgataaagttgtcaaattta
ggtgaaatttctctttccagtgagtttgacattgctgcatatgttgtgtatgtgggagaa
gtctatacagcttctcatcagaagaaacagtgggtgtttgtgacagatgattccatttcc
gatttacagtcagattctttacttgccatcagtttttgctcaccatccattgatgatgac
tcgtttgcaccaatcaaccctaacctagtgggatccatggtaggcttctgtaaccttatc
aagaaaccaaaggatcaaatgaattatctctgggttgctgaagcaacagaaaattctaca
tattatttaaattttaaaccctcaatttctcacctccaaagtgccggcgcttctgttcag
gcatgggcaaaggcctctagctcgattattgacgaactccggaagaaggttttatttgta
attggcaattgtgaaggctag
DBGET
integrated database retrieval system
