Gossypium hirsutum (upland cotton): 107949044
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Entry
107949044 CDS
T04793
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X2
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107949044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107949044
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107949044
mRNA degradation factors
5'-3' decay
Decapping complex
107949044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
107949044
NCBI-ProteinID:
XP_016739242
UniProt:
A0A1U8NJF2
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Position
A08:863788..867490
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AA seq
367 aa
AA seq
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MSQPQFGKLMPNLDQQSTKLLNLTVLRRIDPFVEEILITAAHVAFYEFNIDLSQWSRKDV
EGSLFVVKRNTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQDKYLLYRNASQEINGIWFY
DAHELEEVANLFSRILTAYSKVPQKSKATSTKGEFEELEAVSTMAIMDGPLEPSSSTAPS
VADVPDDPAFVNFFSTAMTIGNASKTSNFGQPYQCSAAMPAPSNPPIVASPTVPALHLPY
PLSSSTPLMPLLDTPESGSNHTNLVKPSTFFLHPSSSSQILPPVSTSSPTASLLNPPLSL
QRPHGAPLLQPFPPPAPSPSLTPAPVPTHNYGLNISREKVRDALLALIQDNQFIDMVHRA
LLNAHHS
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagccgcaattcgggaaattaatgcctaatcttgatcaacaaagcacgaaactc
ctcaatttaacggttctccgtcgcatcgaccctttcgtcgaagaaattcttatcaccgct
gctcatgtcgccttctatgagttcaacatcgaccttagccaatggagtcgaaaagatgtc
gaaggatctctttttgttgtcaagaggaatacgcagcctaggtttcagtttattgtgatg
aatagacgcaatactgataatttggtggaaaacctcttgggagatttcgagtatgaagtt
caggataaatatctactataccgcaatgcttctcaggaaataaatggtatttggttctat
gatgcacatgaactcgaggaggttgcgaatctttttagcaggattcttactgcatactca
aaggttccccagaagtcaaaggcaacatcaacaaaaggtgagtttgaagaactggaagct
gtctcaacaatggccatcatggatggtcccttggagccatcatcatcaactgcacccagt
gtcgcagatgtccctgatgaccctgcctttgtgaatttcttcagtacagctatgaccatt
ggaaatgcttcaaagacatcgaattttggacaaccataccaatgttctgctgcaatgcct
gcaccttcgaacccacccattgttgcgtcccctacagtgccagctttgcatttgccatat
cctctatcgtcttctactccattgatgccactacttgatacccctgaatctggaagcaat
catactaatctcgtaaagccctcgacgttctttttgcatccttcctcttcttcacagata
ttgccacctgtctctacatcttcaccgactgcttctctacttaaccctcctctgagtcta
caacgcccacatggtgctccactgctccaaccttttccaccgcctgctccctcaccatca
ctcacgcctgctcccgttcccacgcacaactatggtttaaatatcagtagagaaaaagtt
cgagatgcacttttggctctcattcaggacaatcaattcattgacatggtccaccgagca
cttctaaatgctcatcattcttga
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