Gossypium hirsutum (upland cotton): 107949055
Help
Entry
107949055 CDS
T04793
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X2
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107949055
04120 Ubiquitin mediated proteolysis
107949055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107949055
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107949055
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107949055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
zf-RING_11
zf-RING_Vps41
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
107949055
NCBI-ProteinID:
XP_016739254
UniProt:
A0A1U8NK79
LinkDB
All DBs
Position
A08:970353..975666
Genome browser
AA seq
539 aa
AA seq
DB search
MMRLQTYAGLSLVAMLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCISWQI
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFLGFLLLLDCLFLSSSIKFLIETRQASVSLFFAFEYM
ILATTIVSTFIKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSMYLCFFLAIFMNYG
VPLHLIRELYETFRNFKIRVADYMRYRKIASNMNDRFPDATPEELAANDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTSSSGGQHGPWSDAQGQGSGT
GSARQGSDGDMAADNLTQHQARLQAAATAASIYEKSYVYPSANTLVWSPGYAVLPKAYGQ
PDDSTKGESSGETTSTGEQFVIPGGQFNLSFPRFPHCAFVPFQLPRVTGNMGEASSSNLH
IPDSQLEAQKKIIQQQIEVLQNQLQLLQMQKPKTEGSVDTGPTASSDRKGKTISSSSGD
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcaaacctatgctggtctcagtttagtcgcgatgctagctgttatttac
catgcattcaacagtagaggccagttttatcctgctatggtgtatttatcaacctctaag
atcagtttggtgctgcttctcaacatggggcttgtatttatgtgcatctcatggcaaata
accaaaaagatattcctcgggtcccttcgtgaagctgaggttgaacggttgaatgagcag
tcgtggagagaggttatggagatcctctttgcgatcactattttccgtcaggacttctcg
gttacgtttcttgctatggttactgctctgttgttaatcaaggctttgcattggttggca
cagaaaagggttgagtacattgagacgaccccttctgttcctatgttgtctcacattcgg
attgtttcttttctgggtttccttcttcttctagattgtctgtttttgtcaagttctatc
aagtttctgatcgaaacacggcaagcttcagtttccctattctttgcgtttgagtacatg
attctggctacgacaatagtgtcaacttttataaaatatgttttctatgtgagtgacatg
cttatggaaggacaatgggagaagaaggctgtctataccttctacttggagctcattcgg
gacttgcttcacttgtctatgtatttatgcttctttcttgcgattttcatgaactatggt
gtacctctgcacttaatacgggagctatatgaaacctttaggaatttcaaaattcgtgtt
gctgattacatgcgttataggaagatcgcttcaaatatgaatgacagattcccagatgca
acccctgaagagctcgctgcaaatgatgcaacatgtattatatgccgtgaagagatgacc
acagcgaagaagttgatatgtggacatctttttcatgtgcactgtcttcgatcatggctg
gagagacagcatacctgccctacatgtagagctctcgttgtaccacctgaaaacggaaca
agttcatctggagggcaacatggaccttggtcagatgctcaaggacaagggtctggcaca
ggctcagctcgacaaggttctgatggtgacatggctgctgataatttgacccagcatcag
gccaggcttcaggctgctgccactgcagcatcaatatatgagaaatcctacgtctatcca
tctgcaaacactctagtttggtctcctggatatgctgtacttcccaaggcttatgggcaa
ccggatgactccacgaagggcgaatctagtggggaaaccacatccaccggagaacaattt
gtcattcctggtggacaattcaacttgtcctttccacggttcccacattgtgcttttgtt
cctttccaattgcctcgtgttactggaaacatgggagaggcatcgagtagtaatctgcac
attccagattctcagttggaagctcagaagaagatcattcagcaacagattgaggtgcta
caaaatcagctccaactcctgcagatgcagaagccgaaaactgaaggaagtgtggacact
ggtcccacagcatcgtcggacagaaaagggaagacaatttcttcttcttcaggagattga
DBGET
integrated database retrieval system
