Gossypium hirsutum (upland cotton): 107949258
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Entry
107949258 CDS
T04793
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107949258
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107949258
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
107949258
NCBI-ProteinID:
XP_016739479
UniProt:
A0A1U8NNF7
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Position
D08:63765941..63767087
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AA seq
350 aa
AA seq
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MNVIDKCWRGNPFWQSQRQQLAKCSVGFAGKMINNIGKDVVKYKVTDPSDDPLSPKPGTL
RYGTTMIKGKVWITFKNSMTITLQRPLLLSSFTAIDGRGINVHITGVGCLLVYQVTDIII
HGLRIHHCKAQPPSTVMGPNAKVIPLGQMDGDAIRLVTARKVWIDHNTLYECQDGLLDVT
RGSTNITISNNWFRNQDKVMLLGHDDGHLRDRNMKVTVIFNHFGPNCNQRMPRVRHGYAH
VANNFYQGWEQYAIGGSMSPSIKSEANFFVASNDVGNKEVTWRKGEKGLWKFYSVGDVFK
NGASFSKQTGVGGAKPNYNREQDFKVVGAGSVKELTSESGVLRCSRSLTC
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtaatcgataaatgttggagaggtaaccctttttggcaaagtcaacgacaacaa
ttagccaaatgctctgttggtttcgccggtaaaatgatcaacaacatcggcaaagatgtt
gtgaaatacaaggtcaccgatccttctgatgaccctttaagtcctaagccaggaaccctt
cgttacggaaccacaatgatcaaaggcaaagtatggatcacattcaaaaatagcatgacc
attacactccaaagaccacttctcttaagcagcttcaccgccatcgacggtcgtggtatc
aacgtccacataaccggcgtcgggtgcctgctagtgtaccaagtgaccgatattatcatc
catggtcttcgcatacaccattgcaaggcccaaccacctagcaccgtgatgggtccaaat
gcgaaggtgatccccttaggacaaatggatggagacgctataagattggtcactgcaagg
aaagtgtggattgatcataacacattgtatgagtgccaagacggtctcctcgacgtcact
cgtggttctacaaacattaccatatcgaataattggttcaggaaccaagacaaagtcatg
ctccttgggcacgacgatggtcatttgagagacagaaacatgaaggtcactgtcattttc
aatcatttcggacctaactgcaaccaaagaatgccaagagttcgccatggatacgcgcat
gtagctaacaatttttaccaagggtgggagcaatatgccataggtggaagcatgagccct
agcatcaagagcgaagccaattttttcgtcgcttcaaatgatgttgggaacaaagaggta
acatggagaaaaggggaaaaaggtttatggaaattttattcagtaggggatgttttcaaa
aatggagcatctttcagtaagcaaacaggtgtaggtggggcgaagcctaactataaccga
gaacaggattttaaagttgtcggtgctggatctgttaaagaattgacaagtgaatctggt
gttttaagatgctccaggagtttaacatgctaa
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