Gossypium hirsutum (upland cotton): 107949523
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Entry
107949523 CDS
T04793
Name
(RefSeq) F-box protein SKP2B
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107949523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107949523
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
107949523
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Gene cluster
GFIT
Motif
Pfam:
DUF7885
LRR_6
LRR_4
F-box-like
LRR_At5g56370
F-box
LRR_Zer-1
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
107949523
NCBI-ProteinID:
XP_016739679
UniProt:
A0A1U8NP10
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Position
D03:18124514..18128152
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AA seq
372 aa
AA seq
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MIGEEKVRSEFLNLCFEKLMMVAAGNSGEGVKRKGAVITEWKDIPMELLLRIVSLVDDRT
AIVASGVCSGWRDAICLGLTHLCLSWCWKNMNNLVLSLAPKFTKLLTLVLRQENPQLEDT
AVETIAKFCHDLQDLDLSKSFKLGDRSFYALAHGCPNLTKLNISGCTSFSDEGLEYLTKF
CRKLKILNLCGCVKAATDCALQAIGQNCNMLHSLNLGWCDNVGDLGVTSLAYGCPDLRCL
DLCGCVRITDDSVIALANGCLHLRSLGLYYCRNITDTAMYSLAHSRVKNKASIWQSMKGR
YDEEGLRSLNISQCTALTPSAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCACAVQS
HRTLNSILHTAH
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgataggtgaagaaaaggtgcgaagtgaattcttgaacttgtgctttgagaagctgatg
atggttgctgctggaaatagtggtgaaggagttaagaggaagggtgcggtgatcactgag
tggaaagatattcctatggagctgttgttgagaattgtttcccttgttgatgatcgaact
gctattgttgcttctggtgtttgtagtgggtggagggatgctatttgcttgggccttacc
catctctgtctctcatggtgctggaagaacatgaacaacttggttctatcccttgctcct
aaatttaccaaattgctaactctcgtactacgccaagaaaatccgcagcttgaggacact
gctgttgagactattgcgaaattctgtcatgatctgcaggatctggacctcagcaaaagt
ttcaagcttggtgatcgctcattttatgctttggcccatggttgccctaatcttacaaaa
cttaacatcagtggctgcacatcattcagtgatgaaggtcttgaatatttgactaaattt
tgtcgaaaactaaaaatattaaatctctgtggatgcgttaaagctgcaactgactgcgca
ttgcaggctattggacagaactgcaatatgttgcactctttaaatctgggatggtgtgac
aacgttggtgatctaggagttacgagtctagcatatggatgccctgatctcagatgcctt
gacttgtgtggctgtgtccgcataacagatgatagcgtgattgctttggcaaatggatgt
ctccatttgaggtcgcttggtctgtactattgccggaatatcacagacacggcaatgtac
tcactggctcacagccgagtgaagaacaaggcttcaatctggcagtccatgaagggtaga
tatgatgaggaaggtcttagaagtctgaatataagccagtgtactgcactaactccttca
gctgttcaggcattatgtgatacgttccctgctcttcacacctgctctggaaggcattcc
ctcgtcatgagcggctgcttgaacttaacgtccgtgcattgcgcttgtgcagtccaatca
caccgcacactaaacagtattctccatacagctcattga
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