KEGG   Gossypium hirsutum (upland cotton): 107949697
Entry
107949697         CDS       T04793                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03082  ATP-dependent chromatin remodeling
ghi03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107949697
   03083 Polycomb repressive complex
    107949697
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ghi03036]
    107949697
Enzymes [BR:ghi01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107949697
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     107949697
   HDAC complexes
    Sin3A-HDAC complex
     107949697
    BRAF-HDAC complex
     107949697
    REST complex
     107949697
    SHIP complex
     107949697
    MiDAC complex
     107949697
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     107949697
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107949697
  Chromatin remodeling factors
   NuRD complex
    107949697
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 107949697
NCBI-ProteinID: XP_016739921
UniProt: A0A1U8NLN8
LinkDB
Position
D03:complement(41867124..41871831)
AA seq 471 aa
MEDSAGGASLRSGPDGKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRR
MEINRPFPAGPDDIRRFHTEEYVDFLNAVTPDSISDPAYSRHLKRFNVGEDCPVFDGLFG
FCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYHR
RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGVGNGKYYALNIPL
NDGMDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL
RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEVG
SMENLNAPRDMEKIRNMLLEQLSRLSHAPSVPFQTTPSTIQPPEEAEEDMDERPKPRIWN
GDDYESDPEEDEKPLRRFSNSDVIQLTTDADMRQVSQDLKEVKAEEQPPAP
NT seq 1416 nt   +upstreamnt  +downstreamnt
atggaagactctgctggaggcgcatcattacggtcgggtcccgacgggaagaagcggcgt
gtgacatacttctacgagccaacgatcggcgactactattacggtcagggtcacccgatg
aaaccccaccggattcgtatggcacacaatctcatcgtccattattctctccaccgtcgg
atggagattaaccgtcctttccccgccggtcccgacgacatccgtcgctttcacaccgaa
gagtatgtggacttcctcaacgccgtcacccccgattccatctccgaccccgcttattct
cgccatttgaagcgtttcaatgtcggagaggattgccccgtgttcgatgggctttttggt
ttctgccaggcctccgctggtggctccattggtgccgccgttaagttgaatagaggggat
gccgacatcgccatcaattgggctggtggattgcatcatgctaagaaaagcgaggcttct
gggttttgctatgttaatgatatcgtgcttgggattcttgagctcctgaaatatcacagg
cgtgtgctgtatgtagatattgatgttcatcacggtgatggtgtagaagaggcattttac
accactgacagagttatgactgtgtctttccataaatttggggatttcttcccagggact
ggacacatcagggatgttggggtgggtaatggcaaatactatgccttgaatattcccttg
aatgatgggatggatgatgagagttttcggggtctatttcgtcctatcatccaaaaggtc
atggaagtgtatcaaccagatgcagttgttcttcaatgtggagcagattcattgtctggt
gacagattgggttgcttcaacttgtctgtgaagggccatgctgattgtcttcgctttctt
agatctttcaatgttcccctaatggtcttgggtggaggagggtatactatccgcaatgtt
gccagatgttggtgctatgagacagctgttgcagttggggttgagcctgataataagctg
ccttataatgaatattatgagtatttcggtccagattatacacttcatgttgaagtgggc
agcatggagaacctgaatgcacctagagatatggagaagataaggaacatgctattagag
cagctttctagattatctcatgcacccagtgtaccttttcaaacaacaccatccaccatc
caaccgcccgaggaggccgaggaggacatggatgaaagaccaaaacctcgcatatggaat
ggggatgattatgagtctgatcctgaagaggatgagaaacctttacgcagattctccaat
tctgatgtaatacaacttacaacagatgctgatatgaggcaggtatcacaagatttgaaa
gaagtgaaagcagaagaacaaccaccggcaccttga

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