Gossypium hirsutum (upland cotton): 107949785
Help
Entry
107949785 CDS
T04793
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
ghi03440
Homologous recombination
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107949785
03420 Nucleotide excision repair
107949785
03430 Mismatch repair
107949785
03440 Homologous recombination
107949785
03460 Fanconi anemia pathway
107949785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107949785
03032 DNA replication proteins [BR:
ghi03032
]
107949785
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107949785
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107949785
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107949785
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107949785
MMR (mismatch excision repair)
107949785
DSBR (double strand breaks repair)
HR (homologous recombination)
107949785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
SAS4
Motif
Other DBs
NCBI-GeneID:
107949785
NCBI-ProteinID:
XP_016740032
UniProt:
A0A1U8NLX9
LinkDB
All DBs
Position
D03:39072298..39075682
Genome browser
AA seq
626 aa
AA seq
DB search
MAKSVSQDAISTILANPSPDSSSDIPEIIVQVLDLKLTGNRYTFNASDGKMKLRAIFPSN
MSSEIITGGVQNKGLVRILDYTLNDIPNKSEKYLIVTKCEVVSPALETEIKAEVETEEHD
TVLKKPKLEYEARYEAKADVSGIILKPKQEIVSKSAAQIVHEQRANMAPSSRMAMTRRVH
PLVSLNPYQGNWMIKVRLTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARK
FYEKFQLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENSVVEEASNEETFIPETKFNFV
PIEQLGPYVNGRELVDIIGVIQSVNPVSNIKRRIDNENIPKRDLIVADETKKTVVVSLWN
ELANNVGQELFDNADKYPIVAIKSLKVGDFQGVSLSTLGKSSVMINPDIPEAKKLRSWYD
SEGKGSSMASIGLGLSPSSKTGARSMYTDRVSLTHITSNPSLGDEKPAFFSIKAFVSLIR
PEQAMWYRACKTCNKKVTEAVGSGYWCEGCQKNDEECNLRYIMVSKISDTRGEAWVSAFN
EEAEKIVGCSADELDKLKSEQGDIDGYQQKLKEATWVPHLFKVSVTQNEYNNEKRQRITV
KAVAPINFAEESRFLLEEIKKMRNPQ
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatctgtgagccaagatgcaatttcaacgattttggctaacccatctcccgat
tcttcttcagatatccctgaaatcatcgttcaggtcttggatcttaagctcactggcaac
cgttacacgtttaatgcaagtgatgggaagatgaagctgagagcgatttttccatcaaac
atgtcatctgaaatcattacaggcggtgtccagaacaagggtcttgtcaggattcttgat
tataccctcaatgatatccccaacaaatctgaaaagtatttgattgtaacaaaatgcgag
gtagtatctcctgcacttgagacagaaattaaagctgaagtcgaaactgaggaacatgac
actgttttaaagaagccaaagcttgaatatgaagctagatatgaggctaaagctgacgtg
tctggtattattttgaagccaaagcaggaaattgtttcaaagtctgcggctcaaatagta
catgagcaacgagcaaacatggctccgtcatcacggatggcaatgacaagaagagtgcat
cctcttgtttcattgaatccttaccagggcaattggatgattaaagttcgtctcacaagc
aagggaaacatgcgtacctataagaatgctagaggagaaggttgtgttttcaatgtggag
ttaacagatgaagatggtacacaaatacaagccacaatgtttaatgaagctgctaggaag
ttctatgagaagtttcaactggggaaggtctattacatatcaagaggaacactaaaagtt
gcaaataagcagtttaagactgttcaaaatgattatgaaatgactttgaatgagaattcc
gtggtggaagaggcttctaatgaagaaacgtttattcctgaaactaaattcaactttgtc
cctattgaacaattaggcccttatgttaatggacgggagcttgttgatattattggagtt
attcaaagtgtcaaccctgtatcaaatattaaaaggaggattgacaatgagaatattcca
aagagggatctgattgttgcagatgaaacgaagaagacagtagtcgtttctttgtggaat
gagcttgcaaataatgttggccaggaattgtttgacaatgctgataaatatcctatagta
gcaattaaatcactcaaagttggtgattttcaaggtgtatctttgtcaacattgggcaaa
agtagtgtgatgattaatccagatatacctgaagcaaagaagttgagatcttggtatgat
tcggaagggaaagggagttccatggcctccatcggcttaggtttgagtccttcatccaag
actggggcaagatctatgtatactgatagggtttcccttacgcatatcactagtaaccca
tctttgggtgatgaaaagcctgcatttttcagcattaaagcatttgtcagcttgatcagg
cctgagcaagcaatgtggtaccgtgcttgcaaaacatgcaacaagaaagtaactgaagct
gttggatctggctattggtgtgagggatgccagaaaaatgatgaagagtgtaatttaaga
tacataatggtctcaaagatctctgatacaagaggtgaagcctgggtttcagcctttaat
gaagaagcagagaaaatagttggatgctcagctgatgaacttgataaactcaagtcagag
caaggggatattgatggataccaacaaaagttgaaggaagcaacttgggttcctcatctt
ttcaaggtcagtgttactcaaaatgagtataacaatgagaagcggcaaaggataacagta
aaggctgtcgctccaatcaactttgctgaagaatccagatttctgcttgaagagatcaag
aagatgagaaatcctcagtag
DBGET
integrated database retrieval system
