Gossypium hirsutum (upland cotton): 107950013
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Entry
107950013 CDS
T04793
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107950013
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107950013
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
MICSWaP
RhgB_N
Motif
Other DBs
NCBI-GeneID:
107950013
NCBI-ProteinID:
XP_040945409
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Position
D03:3984219..3994181
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AA seq
660 aa
AA seq
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MVIQLSLFLSVFSTEIHARKFLKDNHINTNDVRLHISDRLVVIDNGLVEVTIENPSGYLI
GIKYKKMQNVLERRNHNSNRGYWDIVWDGNSYDKLETKHVEVITQTNDIVELSFTKTWNS
KNHGKTIPLNIQKRYIVRRGISGVYMYGIFERQEDFPKAHMYQIRIAFKLKEDKFRFMAL
SDTIQRVMPRSEDRVKGHSKPLDFKEAVLLTNPSNPKLKGEVDDKYQYSTENKDNKLNGW
ISDHDSVGFWIMTPSNEFRTGGPHKQDLTSHVGPTALSMFVSTHYTGTEINTFYKEGEAW
KKVFGPVLIYLNSASSKDDDHRKILWNDAKRQLSEEIESWPYNFTQSEDFPHSQQRGQVN
GQLLVQDRYMDKQLMQAKSAFVGLAPPGEADSWQKEGKGYQFWTQTDEIGRFNIKNVRPG
VYNLYAWAHGFIGSYKLDLDITILPGNKIELDTLIYDPPRNGPTLWEIGIPDRTAAEFFI
PEPYPQYVNSITNDGADKFRQYGLWDRYSDIYRDSDLVYTVGTSNYSKDWFFAHVPRKIG
DDRCRPTTWQIKYNLQDVNNRGTYTLQMAIAAASFAEVEVQFNDPNSDRPHFTTKRIGYD
NAVPRHGIHGLYRLYSIEVPGYRFRKGSNTIYLTQTRSDNSFEAVMYDYIRLEGPNSLNN
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggtgattcaattatcactgtttctctctgttttctctactgaaatccatgccagaaaa
ttcctaaaggacaaccacattaacactaatgatgtccgtttacacataagtgatcgccta
gtggttattgataatggacttgttgaagtcactatcgagaatccatctggttacttgata
ggaattaaatataaaaagatgcaaaatgtacttgaaaggagaaaccacaattctaataga
gggtactgggacattgtgtgggatggtaattcctatgacaaactagaaaccaaacacgtt
gaggtcataacacaaactaatgacattgtagagctttcctttaccaaaacatggaattct
aaaaaccatggaaagacaattcccttgaacatacaaaaaaggtacatagtccggcgcggc
atctcgggggtctacatgtacggcattttcgagcgccaggaagattttccgaaagctcat
atgtaccaaataaggattgctttcaagctcaaggaagacaagttccgattcatggcgtta
tcggacacgatacaacgagtcatgcctcgaagcgaagatcgggtcaaaggtcatagtaag
cctcttgacttcaaagaagcagttttactgacaaatccatcaaatccaaaacttaaagga
gaggttgacgataagtaccaatattctactgagaataaagataacaagcttaacggttgg
atatcggatcacgattccgtcggtttttggataatgacccctagtaatgagtttcgaacc
ggcggtccgcataaacaggaccttacttctcatgtcggtccgactgctctttcgatgttt
gttagtacgcattataccggaaccgaaatcaacacattctataaggaaggagaggcttgg
aaaaaagtttttggtccggttttgatctatcttaattctgcttcttcaaaggacgatgat
caccgaaagatcctgtggaatgatgctaaaagacagttgagtgaagaaattgaaagttgg
ccttacaatttcactcaatcagaagattttcctcactctcaacaacgaggacaagttaat
ggacaactgctagtgcaagaccggtacatggataagcaattaatgcaggcaaaatctgcc
tttgttgggttggccccccctggagaagctgattcatggcaaaaagaaggaaagggctac
caattttggacccaaaccgacgagattggtcgtttcaacataaaaaatgttcgaccaggg
gtgtataatttgtatgcttgggcccatggtttcattggaagctacaaattagatctcgat
atcactatcctaccaggaaataagatcgaattggatacacttatatatgatccaccaaga
aatggaccaacattgtgggaaattgggattccagacaggacagcggccgagttcttcata
cctgaaccatacccacaatatgtcaattcaattaccaatgatggtgcagacaaattcagg
caatatggattgtgggaccgatactcggatatttatcgtgatagtgaccttgtctacact
gtgggtacaagcaactattcaaaggattggttctttgctcatgttccaaggaaaatcggg
gacgataggtgccgaccaacaacatggcaaatcaaatacaatctccaagatgtaaacaat
agaggaacctacactctccaaatggcaatagcagcagcttcttttgcagaagtagaggtt
caattcaacgatccaaattccgatcgacctcattttacaaccaaaagaatcggttacgac
aacgccgtaccaaggcacgggattcatggattgtatagattgtacagcattgaagtacct
ggatatagatttcgtaaagggagcaacacaatatatcttactcagacaagaagtgacaac
tcttttgaagctgttatgtatgattacattcggttagaagggcctaatagtttaaacaat
taa
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